Hb_000011_310

Information

Type -
Description -
Location Contig11: 346754-349981
Sequence    

Annotation

kegg
ID rcu:RCOM_0417930
description DNA binding protein, putative
nr
ID XP_012068797.1
description PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
swissprot
ID Q9M2D8
description Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1
trembl
ID A0A067KWP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_310 0.0 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
2 Hb_000529_010 0.1577787831 - - cyclin d, putative [Ricinus communis]
3 Hb_009079_040 0.1607961308 - - BnaA02g30070D [Brassica napus]
4 Hb_002498_030 0.1679649775 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004147_070 0.1728055686 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
6 Hb_001902_200 0.180964474 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
7 Hb_005332_040 0.1812514625 - - hypothetical protein RCOM_0530890 [Ricinus communis]
8 Hb_000086_290 0.1847454416 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
9 Hb_000920_160 0.1905202059 - - annexin [Manihot esculenta]
10 Hb_001369_630 0.190826678 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
11 Hb_000025_160 0.1917980367 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
12 Hb_001401_040 0.1976292676 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
13 Hb_000193_340 0.2033329953 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
14 Hb_133279_010 0.2049320909 - - spermidine synthase 1, putative [Ricinus communis]
15 Hb_003408_010 0.2060481057 - - fructokinase [Manihot esculenta]
16 Hb_029977_020 0.2104118034 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
17 Hb_061222_010 0.2114476072 - - hypothetical protein RCOM_0012650 [Ricinus communis]
18 Hb_017439_010 0.2128066768 - - putative actin-97 protein [Linum usitatissimum]
19 Hb_001408_170 0.2146224887 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
20 Hb_000328_010 0.2151361071 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_000011_310 Hb_000011_310 Hb_000529_010 Hb_000529_010 Hb_000011_310--Hb_000529_010 Hb_009079_040 Hb_009079_040 Hb_000011_310--Hb_009079_040 Hb_002498_030 Hb_002498_030 Hb_000011_310--Hb_002498_030 Hb_004147_070 Hb_004147_070 Hb_000011_310--Hb_004147_070 Hb_001902_200 Hb_001902_200 Hb_000011_310--Hb_001902_200 Hb_005332_040 Hb_005332_040 Hb_000011_310--Hb_005332_040 Hb_000025_160 Hb_000025_160 Hb_000529_010--Hb_000025_160 Hb_042083_030 Hb_042083_030 Hb_000529_010--Hb_042083_030 Hb_000920_160 Hb_000920_160 Hb_000529_010--Hb_000920_160 Hb_000120_940 Hb_000120_940 Hb_000529_010--Hb_000120_940 Hb_001675_170 Hb_001675_170 Hb_000529_010--Hb_001675_170 Hb_002900_180 Hb_002900_180 Hb_009079_040--Hb_002900_180 Hb_000027_280 Hb_000027_280 Hb_009079_040--Hb_000027_280 Hb_009079_040--Hb_004147_070 Hb_003055_090 Hb_003055_090 Hb_009079_040--Hb_003055_090 Hb_009079_040--Hb_001902_200 Hb_017439_010 Hb_017439_010 Hb_002498_030--Hb_017439_010 Hb_000328_010 Hb_000328_010 Hb_002498_030--Hb_000328_010 Hb_001102_160 Hb_001102_160 Hb_002498_030--Hb_001102_160 Hb_003408_010 Hb_003408_010 Hb_002498_030--Hb_003408_010 Hb_034726_010 Hb_034726_010 Hb_002498_030--Hb_034726_010 Hb_004147_070--Hb_001902_200 Hb_001366_170 Hb_001366_170 Hb_004147_070--Hb_001366_170 Hb_008725_070 Hb_008725_070 Hb_004147_070--Hb_008725_070 Hb_000540_160 Hb_000540_160 Hb_004147_070--Hb_000540_160 Hb_004147_070--Hb_003408_010 Hb_001401_040 Hb_001401_040 Hb_004147_070--Hb_001401_040 Hb_001902_200--Hb_001366_170 Hb_003813_060 Hb_003813_060 Hb_001902_200--Hb_003813_060 Hb_001369_630 Hb_001369_630 Hb_001902_200--Hb_001369_630 Hb_000086_290 Hb_000086_290 Hb_001902_200--Hb_000086_290 Hb_001902_200--Hb_003408_010 Hb_029977_020 Hb_029977_020 Hb_005332_040--Hb_029977_020 Hb_002686_260 Hb_002686_260 Hb_005332_040--Hb_002686_260 Hb_000754_070 Hb_000754_070 Hb_005332_040--Hb_000754_070 Hb_001148_100 Hb_001148_100 Hb_005332_040--Hb_001148_100 Hb_002200_070 Hb_002200_070 Hb_005332_040--Hb_002200_070 Hb_005408_070 Hb_005408_070 Hb_005332_040--Hb_005408_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0119848 0.131653 0.26561 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0329753 0.0259419 0.048649 0.0414475 0.0541617

CAGE analysis