Hb_000086_290

Information

Type -
Description -
Location Contig86: 244949-249248
Sequence    

Annotation

kegg
ID rcu:RCOM_0259100
description hypothetical protein
nr
ID XP_012085278.1
description PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
swissprot
ID Q9CXF4
description TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1
trembl
ID A0A067JRC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17664 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_290 0.0 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
2 Hb_001902_200 0.1601108615 - - PREDICTED: tubulin beta-1 chain [Eucalyptus grandis]
3 Hb_003878_050 0.1753137766 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
4 Hb_000011_310 0.1847454416 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
5 Hb_048384_010 0.1898696337 - - PREDICTED: probable receptor-like protein kinase At2g42960 [Cucumis sativus]
6 Hb_000260_280 0.1917901987 - - auxin:hydrogen symporter, putative [Ricinus communis]
7 Hb_032972_010 0.1936489485 - - Glycolipid transfer protein, putative [Ricinus communis]
8 Hb_001369_630 0.1941435452 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
9 Hb_000696_070 0.1952144759 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
10 Hb_001148_100 0.1970024262 - - -
11 Hb_003813_060 0.1998805645 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004204_110 0.2012389556 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
13 Hb_012362_030 0.2017149735 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
14 Hb_004162_060 0.2039779433 - - unnamed protein product [Vitis vinifera]
15 Hb_000062_090 0.207835815 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
16 Hb_006903_030 0.2105847933 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
17 Hb_000776_060 0.2127558384 - - histone H4 [Zea mays]
18 Hb_000754_070 0.2130237359 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002781_050 0.2132934772 - - cytochrome B5 isoform 1, putative [Ricinus communis]
20 Hb_005332_040 0.2138621528 - - hypothetical protein RCOM_0530890 [Ricinus communis]

Gene co-expression network

sample Hb_000086_290 Hb_000086_290 Hb_001902_200 Hb_001902_200 Hb_000086_290--Hb_001902_200 Hb_003878_050 Hb_003878_050 Hb_000086_290--Hb_003878_050 Hb_000011_310 Hb_000011_310 Hb_000086_290--Hb_000011_310 Hb_048384_010 Hb_048384_010 Hb_000086_290--Hb_048384_010 Hb_000260_280 Hb_000260_280 Hb_000086_290--Hb_000260_280 Hb_032972_010 Hb_032972_010 Hb_000086_290--Hb_032972_010 Hb_001366_170 Hb_001366_170 Hb_001902_200--Hb_001366_170 Hb_004147_070 Hb_004147_070 Hb_001902_200--Hb_004147_070 Hb_003813_060 Hb_003813_060 Hb_001902_200--Hb_003813_060 Hb_001369_630 Hb_001369_630 Hb_001902_200--Hb_001369_630 Hb_003408_010 Hb_003408_010 Hb_001902_200--Hb_003408_010 Hb_026889_040 Hb_026889_040 Hb_003878_050--Hb_026889_040 Hb_000477_040 Hb_000477_040 Hb_003878_050--Hb_000477_040 Hb_000703_280 Hb_000703_280 Hb_003878_050--Hb_000703_280 Hb_004158_020 Hb_004158_020 Hb_003878_050--Hb_004158_020 Hb_003878_050--Hb_001369_630 Hb_000935_040 Hb_000935_040 Hb_003878_050--Hb_000935_040 Hb_000529_010 Hb_000529_010 Hb_000011_310--Hb_000529_010 Hb_009079_040 Hb_009079_040 Hb_000011_310--Hb_009079_040 Hb_002498_030 Hb_002498_030 Hb_000011_310--Hb_002498_030 Hb_000011_310--Hb_004147_070 Hb_000011_310--Hb_001902_200 Hb_005332_040 Hb_005332_040 Hb_000011_310--Hb_005332_040 Hb_001989_100 Hb_001989_100 Hb_048384_010--Hb_001989_100 Hb_032143_020 Hb_032143_020 Hb_048384_010--Hb_032143_020 Hb_002900_180 Hb_002900_180 Hb_048384_010--Hb_002900_180 Hb_048384_010--Hb_001902_200 Hb_010883_180 Hb_010883_180 Hb_048384_010--Hb_010883_180 Hb_000260_280--Hb_032972_010 Hb_025466_020 Hb_025466_020 Hb_000260_280--Hb_025466_020 Hb_000210_100 Hb_000210_100 Hb_000260_280--Hb_000210_100 Hb_001454_100 Hb_001454_100 Hb_000260_280--Hb_001454_100 Hb_029920_020 Hb_029920_020 Hb_000260_280--Hb_029920_020 Hb_006903_030 Hb_006903_030 Hb_000260_280--Hb_006903_030 Hb_175933_010 Hb_175933_010 Hb_032972_010--Hb_175933_010 Hb_000683_100 Hb_000683_100 Hb_032972_010--Hb_000683_100 Hb_000027_210 Hb_000027_210 Hb_032972_010--Hb_000027_210 Hb_001208_030 Hb_001208_030 Hb_032972_010--Hb_001208_030 Hb_001208_040 Hb_001208_040 Hb_032972_010--Hb_001208_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0303237 0.0956021 0.439244 1.44161 0 0.0463196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.138289 0.190383 0.407339 0.423934 0.170035

CAGE analysis