Hb_000529_010

Information

Type -
Description -
Location Contig529: 11291-13286
Sequence    

Annotation

kegg
ID rcu:RCOM_0070750
description cyclin d, putative
nr
ID XP_002530701.1
description cyclin d, putative [Ricinus communis]
swissprot
ID Q8LGA1
description Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2
trembl
ID B9SXI2
description Cyclin d, putative OS=Ricinus communis GN=RCOM_0070750 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-d4-1 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47221: 12120-13428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_010 0.0 - - cyclin d, putative [Ricinus communis]
2 Hb_000025_160 0.1484119748 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
3 Hb_042083_030 0.1490593772 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000011_310 0.1577787831 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
5 Hb_000920_160 0.1629919767 - - annexin [Manihot esculenta]
6 Hb_000120_940 0.1638511837 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
7 Hb_001675_170 0.1661503791 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 [Malus domestica]
8 Hb_002759_070 0.167879407 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
9 Hb_000193_340 0.1682872451 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
10 Hb_048476_140 0.1722318842 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
11 Hb_061222_010 0.1780115439 - - hypothetical protein RCOM_0012650 [Ricinus communis]
12 Hb_000003_110 0.1800483594 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_002073_170 0.181042741 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
14 Hb_161396_010 0.1814022385 - - hypothetical protein F383_26394 [Gossypium arboreum]
15 Hb_005253_020 0.1850946552 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
16 Hb_000003_210 0.1862307797 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
17 Hb_000108_240 0.1873137498 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
18 Hb_000076_030 0.1889848432 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
19 Hb_002284_220 0.1908990607 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
20 Hb_006788_040 0.1950201316 - - calmodulin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000529_010 Hb_000529_010 Hb_000025_160 Hb_000025_160 Hb_000529_010--Hb_000025_160 Hb_042083_030 Hb_042083_030 Hb_000529_010--Hb_042083_030 Hb_000011_310 Hb_000011_310 Hb_000529_010--Hb_000011_310 Hb_000920_160 Hb_000920_160 Hb_000529_010--Hb_000920_160 Hb_000120_940 Hb_000120_940 Hb_000529_010--Hb_000120_940 Hb_001675_170 Hb_001675_170 Hb_000529_010--Hb_001675_170 Hb_002233_160 Hb_002233_160 Hb_000025_160--Hb_002233_160 Hb_061222_010 Hb_061222_010 Hb_000025_160--Hb_061222_010 Hb_012395_110 Hb_012395_110 Hb_000025_160--Hb_012395_110 Hb_000193_340 Hb_000193_340 Hb_000025_160--Hb_000193_340 Hb_004241_110 Hb_004241_110 Hb_000025_160--Hb_004241_110 Hb_000023_110 Hb_000023_110 Hb_000025_160--Hb_000023_110 Hb_000076_030 Hb_000076_030 Hb_042083_030--Hb_000076_030 Hb_048476_140 Hb_048476_140 Hb_042083_030--Hb_048476_140 Hb_004041_050 Hb_004041_050 Hb_042083_030--Hb_004041_050 Hb_042083_030--Hb_000193_340 Hb_000417_380 Hb_000417_380 Hb_042083_030--Hb_000417_380 Hb_161396_010 Hb_161396_010 Hb_042083_030--Hb_161396_010 Hb_009079_040 Hb_009079_040 Hb_000011_310--Hb_009079_040 Hb_002498_030 Hb_002498_030 Hb_000011_310--Hb_002498_030 Hb_004147_070 Hb_004147_070 Hb_000011_310--Hb_004147_070 Hb_001902_200 Hb_001902_200 Hb_000011_310--Hb_001902_200 Hb_005332_040 Hb_005332_040 Hb_000011_310--Hb_005332_040 Hb_000920_160--Hb_000120_940 Hb_001922_030 Hb_001922_030 Hb_000920_160--Hb_001922_030 Hb_031089_020 Hb_031089_020 Hb_000920_160--Hb_031089_020 Hb_002759_070 Hb_002759_070 Hb_000920_160--Hb_002759_070 Hb_001329_180 Hb_001329_180 Hb_000920_160--Hb_001329_180 Hb_026527_010 Hb_026527_010 Hb_000920_160--Hb_026527_010 Hb_000120_940--Hb_002759_070 Hb_005253_020 Hb_005253_020 Hb_000120_940--Hb_005253_020 Hb_000463_120 Hb_000463_120 Hb_000120_940--Hb_000463_120 Hb_000003_210 Hb_000003_210 Hb_000120_940--Hb_000003_210 Hb_000297_140 Hb_000297_140 Hb_000120_940--Hb_000297_140 Hb_000032_250 Hb_000032_250 Hb_001675_170--Hb_000032_250 Hb_001348_010 Hb_001348_010 Hb_001675_170--Hb_001348_010 Hb_003097_130 Hb_003097_130 Hb_001675_170--Hb_003097_130 Hb_021065_010 Hb_021065_010 Hb_001675_170--Hb_021065_010 Hb_010672_050 Hb_010672_050 Hb_001675_170--Hb_010672_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0329686 0.378745 0.786521 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0453146 0.0356427 0.131949 0.200257 0.366819

CAGE analysis