Hb_002233_160

Information

Type -
Description -
Location Contig2233: 145440-146162
Sequence    

Annotation

kegg
ID rcu:RCOM_0522220
description hypothetical protein
nr
ID XP_012071018.1
description PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01035 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 013_H24.ab1: 145046-145599

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_160 0.0 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
2 Hb_000260_110 0.1115234298 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
3 Hb_005542_070 0.1184768957 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
4 Hb_012368_050 0.118884605 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002781_040 0.1196184742 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000025_160 0.1231580184 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
7 Hb_006002_050 0.1313965503 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
8 Hb_000103_070 0.1322669798 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
9 Hb_003893_180 0.1323574748 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
10 Hb_000011_280 0.1330067846 - - pectinesterase family protein [Populus trichocarpa]
11 Hb_000003_110 0.1361792919 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_007659_050 0.1404419572 - - PREDICTED: xylogen-like protein 11 [Jatropha curcas]
13 Hb_000297_140 0.1416978147 - - hypothetical protein RCOM_0293450 [Ricinus communis]
14 Hb_006788_110 0.1433412226 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
15 Hb_084147_010 0.1455817529 - - amino acid transporter, putative [Ricinus communis]
16 Hb_003125_210 0.1474982064 - - Phospholipase C 4 precursor, putative [Ricinus communis]
17 Hb_000984_130 0.1485687873 - - tubulin [Ornithogalum longebracteatum]
18 Hb_000735_020 0.1507987959 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
19 Hb_002600_120 0.1514222449 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
20 Hb_061222_010 0.1534265995 - - hypothetical protein RCOM_0012650 [Ricinus communis]

Gene co-expression network

sample Hb_002233_160 Hb_002233_160 Hb_000260_110 Hb_000260_110 Hb_002233_160--Hb_000260_110 Hb_005542_070 Hb_005542_070 Hb_002233_160--Hb_005542_070 Hb_012368_050 Hb_012368_050 Hb_002233_160--Hb_012368_050 Hb_002781_040 Hb_002781_040 Hb_002233_160--Hb_002781_040 Hb_000025_160 Hb_000025_160 Hb_002233_160--Hb_000025_160 Hb_006002_050 Hb_006002_050 Hb_002233_160--Hb_006002_050 Hb_000011_280 Hb_000011_280 Hb_000260_110--Hb_000011_280 Hb_010883_180 Hb_010883_180 Hb_000260_110--Hb_010883_180 Hb_002900_180 Hb_002900_180 Hb_000260_110--Hb_002900_180 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000462_070 Hb_000462_070 Hb_000260_110--Hb_000462_070 Hb_005542_070--Hb_002781_040 Hb_005542_070--Hb_012368_050 Hb_003893_180 Hb_003893_180 Hb_005542_070--Hb_003893_180 Hb_000230_410 Hb_000230_410 Hb_005542_070--Hb_000230_410 Hb_000103_070 Hb_000103_070 Hb_005542_070--Hb_000103_070 Hb_012368_050--Hb_002781_040 Hb_005542_120 Hb_005542_120 Hb_012368_050--Hb_005542_120 Hb_000903_040 Hb_000903_040 Hb_012368_050--Hb_000903_040 Hb_006788_110 Hb_006788_110 Hb_012368_050--Hb_006788_110 Hb_002781_040--Hb_005542_120 Hb_002781_040--Hb_000103_070 Hb_000003_280 Hb_000003_280 Hb_002781_040--Hb_000003_280 Hb_001117_050 Hb_001117_050 Hb_002781_040--Hb_001117_050 Hb_061222_010 Hb_061222_010 Hb_000025_160--Hb_061222_010 Hb_012395_110 Hb_012395_110 Hb_000025_160--Hb_012395_110 Hb_000193_340 Hb_000193_340 Hb_000025_160--Hb_000193_340 Hb_004241_110 Hb_004241_110 Hb_000025_160--Hb_004241_110 Hb_000023_110 Hb_000023_110 Hb_000025_160--Hb_000023_110 Hb_006002_050--Hb_000011_280 Hb_000997_080 Hb_000997_080 Hb_006002_050--Hb_000997_080 Hb_001159_230 Hb_001159_230 Hb_006002_050--Hb_001159_230 Hb_006002_050--Hb_000003_280 Hb_002783_280 Hb_002783_280 Hb_006002_050--Hb_002783_280 Hb_000297_140 Hb_000297_140 Hb_006002_050--Hb_000297_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0714579 2.98741 8.52635 26.0894 0.215491 0.0317036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0825462 1.62228 0.462387 2.40417 8.32711

CAGE analysis