Hb_005542_070

Information

Type -
Description -
Location Contig5542: 71289-72010
Sequence    

Annotation

kegg
ID sita:101757157
description uncharacterized LOC101757157
nr
ID AFW77571.1
description hypothetical protein ZEAMMB73_851878 [Zea mays]
swissprot
ID -
description -
trembl
ID A0A096RC87
description Uncharacterized protein OS=Zea mays GN=Zm.17882 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005542_070 0.0 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
2 Hb_002781_040 0.0599375093 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012368_050 0.0998885612 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002233_160 0.1184768957 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
5 Hb_003893_180 0.1205238156 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
6 Hb_000230_410 0.1241501831 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
7 Hb_000103_070 0.1251587883 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
8 Hb_012132_050 0.1303176261 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
9 Hb_010164_030 0.1319751006 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
10 Hb_036520_030 0.1341701122 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
11 Hb_003466_010 0.1354075091 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
12 Hb_001136_160 0.1360771971 - - catalytic, putative [Ricinus communis]
13 Hb_039946_060 0.1374583293 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
14 Hb_004032_290 0.1377669895 - - protein binding protein, putative [Ricinus communis]
15 Hb_048476_130 0.137906119 - - scab resistance family protein [Populus trichocarpa]
16 Hb_000003_280 0.1380175042 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001936_120 0.1382598615 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
18 Hb_001205_040 0.1391121534 - - unnamed protein product [Vitis vinifera]
19 Hb_001136_040 0.1399055083 - - amino acid transporter, putative [Ricinus communis]
20 Hb_001898_040 0.1399504631 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005542_070 Hb_005542_070 Hb_002781_040 Hb_002781_040 Hb_005542_070--Hb_002781_040 Hb_012368_050 Hb_012368_050 Hb_005542_070--Hb_012368_050 Hb_002233_160 Hb_002233_160 Hb_005542_070--Hb_002233_160 Hb_003893_180 Hb_003893_180 Hb_005542_070--Hb_003893_180 Hb_000230_410 Hb_000230_410 Hb_005542_070--Hb_000230_410 Hb_000103_070 Hb_000103_070 Hb_005542_070--Hb_000103_070 Hb_002781_040--Hb_012368_050 Hb_005542_120 Hb_005542_120 Hb_002781_040--Hb_005542_120 Hb_002781_040--Hb_000103_070 Hb_000003_280 Hb_000003_280 Hb_002781_040--Hb_000003_280 Hb_001117_050 Hb_001117_050 Hb_002781_040--Hb_001117_050 Hb_012368_050--Hb_005542_120 Hb_012368_050--Hb_002233_160 Hb_000903_040 Hb_000903_040 Hb_012368_050--Hb_000903_040 Hb_006788_110 Hb_006788_110 Hb_012368_050--Hb_006788_110 Hb_000260_110 Hb_000260_110 Hb_002233_160--Hb_000260_110 Hb_002233_160--Hb_002781_040 Hb_000025_160 Hb_000025_160 Hb_002233_160--Hb_000025_160 Hb_006002_050 Hb_006002_050 Hb_002233_160--Hb_006002_050 Hb_005648_020 Hb_005648_020 Hb_003893_180--Hb_005648_020 Hb_003466_010 Hb_003466_010 Hb_003893_180--Hb_003466_010 Hb_002918_270 Hb_002918_270 Hb_003893_180--Hb_002918_270 Hb_000093_010 Hb_000093_010 Hb_003893_180--Hb_000093_010 Hb_002600_120 Hb_002600_120 Hb_003893_180--Hb_002600_120 Hb_002701_030 Hb_002701_030 Hb_003893_180--Hb_002701_030 Hb_000009_280 Hb_000009_280 Hb_000230_410--Hb_000009_280 Hb_002874_200 Hb_002874_200 Hb_000230_410--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_000230_410--Hb_004032_290 Hb_009783_010 Hb_009783_010 Hb_000230_410--Hb_009783_010 Hb_007185_050 Hb_007185_050 Hb_000230_410--Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_000230_410--Hb_001136_040 Hb_000103_070--Hb_002600_120 Hb_000103_070--Hb_000003_280 Hb_000103_070--Hb_003893_180 Hb_000103_070--Hb_006002_050 Hb_000103_070--Hb_006788_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.361286 0.948772 2.46026 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.128593 0 0.108318 0.934114

CAGE analysis