Hb_012368_050

Information

Type -
Description -
Location Contig12368: 22847-26819
Sequence    

Annotation

kegg
ID rcu:RCOM_0310220
description hypothetical protein
nr
ID XP_002534436.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FG35
description Protein trichome birefringence OS=Arabidopsis thaliana GN=TBR PE=1 SV=1
trembl
ID B9T867
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0310220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012368_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002781_040 0.0669463651 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005542_070 0.0998885612 - - hypothetical protein ZEAMMB73_851878 [Zea mays]
4 Hb_005542_120 0.109261224 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
5 Hb_002233_160 0.118884605 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
6 Hb_000903_040 0.1196342014 - - PREDICTED: pirin-like protein [Jatropha curcas]
7 Hb_006788_110 0.1211035249 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
8 Hb_000878_050 0.1256949726 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
9 Hb_000103_070 0.126336315 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2-like [Jatropha curcas]
10 Hb_033312_070 0.1276823026 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
11 Hb_000003_280 0.128440964 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003125_210 0.1287538425 - - Phospholipase C 4 precursor, putative [Ricinus communis]
13 Hb_000003_580 0.1296852569 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000417_210 0.1300267203 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001117_050 0.1312970792 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
16 Hb_011918_070 0.1317869383 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
17 Hb_000160_250 0.1319694571 - - Uncharacterized protein TCM_019235 [Theobroma cacao]
18 Hb_053264_010 0.1327159682 - - beta glucosidase [Hevea brasiliensis]
19 Hb_007904_280 0.1337752435 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
20 Hb_012132_050 0.1350359924 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]

Gene co-expression network

sample Hb_012368_050 Hb_012368_050 Hb_002781_040 Hb_002781_040 Hb_012368_050--Hb_002781_040 Hb_005542_070 Hb_005542_070 Hb_012368_050--Hb_005542_070 Hb_005542_120 Hb_005542_120 Hb_012368_050--Hb_005542_120 Hb_002233_160 Hb_002233_160 Hb_012368_050--Hb_002233_160 Hb_000903_040 Hb_000903_040 Hb_012368_050--Hb_000903_040 Hb_006788_110 Hb_006788_110 Hb_012368_050--Hb_006788_110 Hb_002781_040--Hb_005542_070 Hb_002781_040--Hb_005542_120 Hb_000103_070 Hb_000103_070 Hb_002781_040--Hb_000103_070 Hb_000003_280 Hb_000003_280 Hb_002781_040--Hb_000003_280 Hb_001117_050 Hb_001117_050 Hb_002781_040--Hb_001117_050 Hb_005542_070--Hb_002233_160 Hb_003893_180 Hb_003893_180 Hb_005542_070--Hb_003893_180 Hb_000230_410 Hb_000230_410 Hb_005542_070--Hb_000230_410 Hb_005542_070--Hb_000103_070 Hb_005542_120--Hb_001117_050 Hb_000878_050 Hb_000878_050 Hb_005542_120--Hb_000878_050 Hb_011918_070 Hb_011918_070 Hb_005542_120--Hb_011918_070 Hb_000392_110 Hb_000392_110 Hb_005542_120--Hb_000392_110 Hb_001396_030 Hb_001396_030 Hb_005542_120--Hb_001396_030 Hb_005542_120--Hb_000003_280 Hb_000260_110 Hb_000260_110 Hb_002233_160--Hb_000260_110 Hb_002233_160--Hb_002781_040 Hb_000025_160 Hb_000025_160 Hb_002233_160--Hb_000025_160 Hb_006002_050 Hb_006002_050 Hb_002233_160--Hb_006002_050 Hb_053264_010 Hb_053264_010 Hb_000903_040--Hb_053264_010 Hb_000417_210 Hb_000417_210 Hb_000903_040--Hb_000417_210 Hb_000676_230 Hb_000676_230 Hb_000903_040--Hb_000676_230 Hb_006846_040 Hb_006846_040 Hb_000903_040--Hb_006846_040 Hb_138585_010 Hb_138585_010 Hb_000903_040--Hb_138585_010 Hb_009783_010 Hb_009783_010 Hb_000903_040--Hb_009783_010 Hb_033312_070 Hb_033312_070 Hb_006788_110--Hb_033312_070 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_000735_020 Hb_000735_020 Hb_006788_110--Hb_000735_020 Hb_004531_160 Hb_004531_160 Hb_006788_110--Hb_004531_160 Hb_000984_130 Hb_000984_130 Hb_006788_110--Hb_000984_130 Hb_006788_110--Hb_011918_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0835288 0.273881 0.612632 0.0102773 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0196415 0 0.0625711 0.289751

CAGE analysis