Hb_000260_110

Information

Type -
Description -
Location Contig260: 74526-76765
Sequence    

Annotation

kegg
ID rcu:RCOM_1059360
description Nodulation receptor kinase precursor, putative (EC:2.7.11.26)
nr
ID XP_002528709.1
description Nodulation receptor kinase precursor, putative [Ricinus communis]
swissprot
ID Q9LVM0
description Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=2 SV=1
trembl
ID B9SRR7
description Nodulation receptor kinase, putative OS=Ricinus communis GN=RCOM_1059360 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable inactive receptor kinase at5g58300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26951: 74290-76522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_110 0.0 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
2 Hb_002233_160 0.1115234298 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
3 Hb_000011_280 0.1151924243 - - pectinesterase family protein [Populus trichocarpa]
4 Hb_010883_180 0.1225961996 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
5 Hb_002900_180 0.1227515294 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
6 Hb_000069_560 0.1231173117 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
7 Hb_000462_070 0.1302344473 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
8 Hb_000984_130 0.1314436642 - - tubulin [Ornithogalum longebracteatum]
9 Hb_001102_160 0.1336222476 - - PREDICTED: galacturonokinase [Jatropha curcas]
10 Hb_188281_010 0.1341330018 - - carboxylic ester hydrolase, putative [Ricinus communis]
11 Hb_006088_020 0.1355023904 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_003893_180 0.1384029626 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
13 Hb_004007_070 0.1395239569 - - adenylsulfate kinase, putative [Ricinus communis]
14 Hb_103942_030 0.1404357752 - - protein with unknown function [Ricinus communis]
15 Hb_000679_250 0.1428113977 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
16 Hb_084147_010 0.1431837159 - - amino acid transporter, putative [Ricinus communis]
17 Hb_006002_050 0.1433323849 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
18 Hb_001369_190 0.1450519662 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
19 Hb_000297_140 0.1452495005 - - hypothetical protein RCOM_0293450 [Ricinus communis]
20 Hb_012395_110 0.1455379836 - - PREDICTED: peroxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_000260_110 Hb_000260_110 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000011_280 Hb_000011_280 Hb_000260_110--Hb_000011_280 Hb_010883_180 Hb_010883_180 Hb_000260_110--Hb_010883_180 Hb_002900_180 Hb_002900_180 Hb_000260_110--Hb_002900_180 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000462_070 Hb_000462_070 Hb_000260_110--Hb_000462_070 Hb_005542_070 Hb_005542_070 Hb_002233_160--Hb_005542_070 Hb_012368_050 Hb_012368_050 Hb_002233_160--Hb_012368_050 Hb_002781_040 Hb_002781_040 Hb_002233_160--Hb_002781_040 Hb_000025_160 Hb_000025_160 Hb_002233_160--Hb_000025_160 Hb_006002_050 Hb_006002_050 Hb_002233_160--Hb_006002_050 Hb_000011_280--Hb_006002_050 Hb_000984_130 Hb_000984_130 Hb_000011_280--Hb_000984_130 Hb_001663_060 Hb_001663_060 Hb_000011_280--Hb_001663_060 Hb_000395_310 Hb_000395_310 Hb_000011_280--Hb_000395_310 Hb_000997_080 Hb_000997_080 Hb_000011_280--Hb_000997_080 Hb_006788_110 Hb_006788_110 Hb_000011_280--Hb_006788_110 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_000086_090 Hb_000086_090 Hb_010883_180--Hb_000086_090 Hb_002900_180--Hb_000462_070 Hb_000003_110 Hb_000003_110 Hb_002900_180--Hb_000003_110 Hb_000890_120 Hb_000890_120 Hb_002900_180--Hb_000890_120 Hb_000017_250 Hb_000017_250 Hb_002900_180--Hb_000017_250 Hb_000540_160 Hb_000540_160 Hb_002900_180--Hb_000540_160 Hb_000030_130 Hb_000030_130 Hb_000069_560--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000069_560--Hb_001102_160 Hb_000922_400 Hb_000922_400 Hb_000069_560--Hb_000922_400 Hb_019516_060 Hb_019516_060 Hb_000069_560--Hb_019516_060 Hb_001775_080 Hb_001775_080 Hb_000069_560--Hb_001775_080 Hb_000462_070--Hb_000984_130 Hb_000462_070--Hb_000997_080 Hb_000413_120 Hb_000413_120 Hb_000462_070--Hb_000413_120 Hb_000462_070--Hb_000017_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.151879 1.6157 4.14435 13.5432 0.148878 0.115807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.267555 0.385956 0.332776 0.963079 2.70739

CAGE analysis