Hb_000086_090

Information

Type -
Description -
Location Contig86: 67866-72567
Sequence    

Annotation

kegg
ID rcu:RCOM_0499500
description ubiquitin-protein ligase, putative
nr
ID XP_012085304.1
description PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
swissprot
ID Q8GWV5
description U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2
trembl
ID A0A067JRK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17680 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60700: 72182-72565 , PASA_asmbl_60701: 66902-72897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_090 0.0 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
2 Hb_000098_170 0.0897786284 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
3 Hb_004007_070 0.096886341 - - adenylsulfate kinase, putative [Ricinus communis]
4 Hb_012395_110 0.1000387951 - - PREDICTED: peroxygenase [Jatropha curcas]
5 Hb_001102_160 0.1247859468 - - PREDICTED: galacturonokinase [Jatropha curcas]
6 Hb_010883_180 0.1337205724 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
7 Hb_000349_200 0.1382980934 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
8 Hb_002893_030 0.1418208069 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
9 Hb_000049_270 0.1487100043 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
10 Hb_000023_110 0.1493178693 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
11 Hb_000603_020 0.1504300927 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
12 Hb_000365_280 0.1515983325 - - calcium binding protein/cast, putative [Ricinus communis]
13 Hb_002316_080 0.1517853676 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
14 Hb_019516_060 0.1533086731 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
15 Hb_103942_030 0.153324604 - - protein with unknown function [Ricinus communis]
16 Hb_034726_010 0.1538099696 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_006153_160 0.1545577905 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
18 Hb_000246_130 0.1586327823 - - tubulin alpha chain, putative [Ricinus communis]
19 Hb_000069_560 0.1634128517 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
20 Hb_084147_010 0.1635413119 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000086_090 Hb_000086_090 Hb_000098_170 Hb_000098_170 Hb_000086_090--Hb_000098_170 Hb_004007_070 Hb_004007_070 Hb_000086_090--Hb_004007_070 Hb_012395_110 Hb_012395_110 Hb_000086_090--Hb_012395_110 Hb_001102_160 Hb_001102_160 Hb_000086_090--Hb_001102_160 Hb_010883_180 Hb_010883_180 Hb_000086_090--Hb_010883_180 Hb_000349_200 Hb_000349_200 Hb_000086_090--Hb_000349_200 Hb_000098_170--Hb_004007_070 Hb_000049_270 Hb_000049_270 Hb_000098_170--Hb_000049_270 Hb_006570_090 Hb_006570_090 Hb_000098_170--Hb_006570_090 Hb_006889_030 Hb_006889_030 Hb_000098_170--Hb_006889_030 Hb_000098_170--Hb_012395_110 Hb_004007_070--Hb_012395_110 Hb_004007_070--Hb_000049_270 Hb_000365_280 Hb_000365_280 Hb_004007_070--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_004007_070--Hb_002893_030 Hb_004241_110 Hb_004241_110 Hb_012395_110--Hb_004241_110 Hb_012395_110--Hb_001102_160 Hb_084147_010 Hb_084147_010 Hb_012395_110--Hb_084147_010 Hb_019516_060 Hb_019516_060 Hb_012395_110--Hb_019516_060 Hb_001102_160--Hb_084147_010 Hb_001102_160--Hb_004007_070 Hb_001102_160--Hb_019516_060 Hb_000246_130 Hb_000246_130 Hb_001102_160--Hb_000246_130 Hb_002316_080 Hb_002316_080 Hb_010883_180--Hb_002316_080 Hb_030565_100 Hb_030565_100 Hb_010883_180--Hb_030565_100 Hb_000260_110 Hb_000260_110 Hb_010883_180--Hb_000260_110 Hb_103942_030 Hb_103942_030 Hb_010883_180--Hb_103942_030 Hb_000054_010 Hb_000054_010 Hb_010883_180--Hb_000054_010 Hb_000271_220 Hb_000271_220 Hb_000349_200--Hb_000271_220 Hb_000011_070 Hb_000011_070 Hb_000349_200--Hb_000011_070 Hb_000603_020 Hb_000603_020 Hb_000349_200--Hb_000603_020 Hb_003929_230 Hb_003929_230 Hb_000349_200--Hb_003929_230 Hb_003006_090 Hb_003006_090 Hb_000349_200--Hb_003006_090 Hb_000056_190 Hb_000056_190 Hb_000349_200--Hb_000056_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305425 1.17039 2.13262 6.2564 0.0456731 0.354047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.321099 0.308816 0.856161 0.362345 2.11804

CAGE analysis