Hb_004241_110

Information

Type -
Description -
Location Contig4241: 120402-124279
Sequence    

Annotation

kegg
ID rcu:RCOM_0066700
description Minor allergen Alt a, putative
nr
ID XP_002534445.1
description Minor allergen Alt a, putative [Ricinus communis]
swissprot
ID Q9LSQ5
description NAD(P)H dehydrogenase (quinone) FQR1 OS=Arabidopsis thaliana GN=FQR1 PE=1 SV=1
trembl
ID B9T876
description Minor allergen Alt a, putative OS=Ricinus communis GN=RCOM_0066700 PE=3 SV=1
Gene Ontology
ID GO:0010181
description minor allergen alt a 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41950: 120440-124251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004241_110 0.0 - - Minor allergen Alt a, putative [Ricinus communis]
2 Hb_084147_010 0.0824544011 - - amino acid transporter, putative [Ricinus communis]
3 Hb_012395_110 0.100097273 - - PREDICTED: peroxygenase [Jatropha curcas]
4 Hb_003001_130 0.1044024273 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007894_070 0.1164141977 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
6 Hb_000227_280 0.1166772137 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
7 Hb_001318_100 0.1209967521 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
8 Hb_031089_020 0.123447528 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
9 Hb_020378_020 0.1235301036 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_004007_070 0.1311623838 - - adenylsulfate kinase, putative [Ricinus communis]
11 Hb_003470_110 0.13318753 - - unnamed protein product [Vitis vinifera]
12 Hb_001493_140 0.1356670618 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
13 Hb_000025_160 0.1385302619 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
14 Hb_000603_020 0.1408748793 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
15 Hb_003929_230 0.1431592099 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
16 Hb_000922_350 0.1440344834 - - PREDICTED: uncharacterized protein LOC105640367 [Jatropha curcas]
17 Hb_003125_210 0.1449506118 - - Phospholipase C 4 precursor, putative [Ricinus communis]
18 Hb_000479_060 0.1463900643 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
19 Hb_001102_160 0.1469156122 - - PREDICTED: galacturonokinase [Jatropha curcas]
20 Hb_000659_040 0.148766012 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004241_110 Hb_004241_110 Hb_084147_010 Hb_084147_010 Hb_004241_110--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_004241_110--Hb_012395_110 Hb_003001_130 Hb_003001_130 Hb_004241_110--Hb_003001_130 Hb_007894_070 Hb_007894_070 Hb_004241_110--Hb_007894_070 Hb_000227_280 Hb_000227_280 Hb_004241_110--Hb_000227_280 Hb_001318_100 Hb_001318_100 Hb_004241_110--Hb_001318_100 Hb_001102_160 Hb_001102_160 Hb_084147_010--Hb_001102_160 Hb_031089_020 Hb_031089_020 Hb_084147_010--Hb_031089_020 Hb_084147_010--Hb_012395_110 Hb_003470_110 Hb_003470_110 Hb_084147_010--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_084147_010--Hb_030565_100 Hb_004007_070 Hb_004007_070 Hb_012395_110--Hb_004007_070 Hb_000086_090 Hb_000086_090 Hb_012395_110--Hb_000086_090 Hb_012395_110--Hb_001102_160 Hb_019516_060 Hb_019516_060 Hb_012395_110--Hb_019516_060 Hb_000603_020 Hb_000603_020 Hb_003001_130--Hb_000603_020 Hb_000928_120 Hb_000928_120 Hb_003001_130--Hb_000928_120 Hb_000283_140 Hb_000283_140 Hb_003001_130--Hb_000283_140 Hb_003001_130--Hb_000227_280 Hb_000271_220 Hb_000271_220 Hb_003001_130--Hb_000271_220 Hb_006414_010 Hb_006414_010 Hb_007894_070--Hb_006414_010 Hb_000210_040 Hb_000210_040 Hb_007894_070--Hb_000210_040 Hb_007894_070--Hb_000227_280 Hb_000659_040 Hb_000659_040 Hb_007894_070--Hb_000659_040 Hb_007894_070--Hb_001318_100 Hb_005488_130 Hb_005488_130 Hb_000227_280--Hb_005488_130 Hb_000227_280--Hb_000283_140 Hb_000028_430 Hb_000028_430 Hb_000227_280--Hb_000028_430 Hb_003266_090 Hb_003266_090 Hb_001318_100--Hb_003266_090 Hb_010222_040 Hb_010222_040 Hb_001318_100--Hb_010222_040 Hb_009113_080 Hb_009113_080 Hb_001318_100--Hb_009113_080 Hb_001318_100--Hb_000659_040 Hb_003125_210 Hb_003125_210 Hb_001318_100--Hb_003125_210 Hb_000856_200 Hb_000856_200 Hb_001318_100--Hb_000856_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15535 24.8379 32.0602 84.1865 0.375713 1.33512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.40056 6.33885 3.15357 12.5521 43.9769

CAGE analysis