Hb_006414_010

Information

Type transcription factor
Description TF Family: GRAS
Location Contig6414: 4491-7226
Sequence    

Annotation

kegg
ID rcu:RCOM_0760840
description hypothetical protein
nr
ID XP_012074952.1
description PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
swissprot
ID O80933
description Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1
trembl
ID A0A067KUX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09082 PE=4 SV=1
Gene Ontology
ID GO:0003700
description scarecrow-like protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52185: 4091-7245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006414_010 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
2 Hb_007894_070 0.0784772824 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
3 Hb_001486_100 0.0875760738 - - tubulin alpha chain, putative [Ricinus communis]
4 Hb_000800_010 0.1032811062 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
5 Hb_000210_040 0.1067523976 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
6 Hb_002740_100 0.1073655836 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
7 Hb_000659_040 0.1120607259 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
8 Hb_000227_280 0.118570939 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
9 Hb_187959_010 0.1220588343 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
10 Hb_003607_140 0.1279489692 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
11 Hb_000326_080 0.1292689968 - - lrr receptor protein kinase, putative [Ricinus communis]
12 Hb_004129_010 0.1352879348 - - aspartate aminotransferase, putative [Ricinus communis]
13 Hb_000941_120 0.1368640201 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
14 Hb_004007_200 0.137428214 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
15 Hb_000363_250 0.1378697412 - - PREDICTED: pirin-like protein [Malus domestica]
16 Hb_000635_050 0.1378697577 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
17 Hb_002888_040 0.1381833048 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
18 Hb_000917_210 0.1409321674 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002838_010 0.1413239519 - - AGPase large subunit protein [Hevea brasiliensis]
20 Hb_003030_010 0.1413471815 - - PREDICTED: random slug protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_006414_010 Hb_006414_010 Hb_007894_070 Hb_007894_070 Hb_006414_010--Hb_007894_070 Hb_001486_100 Hb_001486_100 Hb_006414_010--Hb_001486_100 Hb_000800_010 Hb_000800_010 Hb_006414_010--Hb_000800_010 Hb_000210_040 Hb_000210_040 Hb_006414_010--Hb_000210_040 Hb_002740_100 Hb_002740_100 Hb_006414_010--Hb_002740_100 Hb_000659_040 Hb_000659_040 Hb_006414_010--Hb_000659_040 Hb_007894_070--Hb_000210_040 Hb_000227_280 Hb_000227_280 Hb_007894_070--Hb_000227_280 Hb_007894_070--Hb_000659_040 Hb_004241_110 Hb_004241_110 Hb_007894_070--Hb_004241_110 Hb_001318_100 Hb_001318_100 Hb_007894_070--Hb_001318_100 Hb_001486_100--Hb_002740_100 Hb_000326_080 Hb_000326_080 Hb_001486_100--Hb_000326_080 Hb_002838_010 Hb_002838_010 Hb_001486_100--Hb_002838_010 Hb_000917_210 Hb_000917_210 Hb_001486_100--Hb_000917_210 Hb_003177_090 Hb_003177_090 Hb_001486_100--Hb_003177_090 Hb_000416_060 Hb_000416_060 Hb_000800_010--Hb_000416_060 Hb_005588_120 Hb_005588_120 Hb_000800_010--Hb_005588_120 Hb_004129_010 Hb_004129_010 Hb_000800_010--Hb_004129_010 Hb_001699_170 Hb_001699_170 Hb_000800_010--Hb_001699_170 Hb_132840_030 Hb_132840_030 Hb_000800_010--Hb_132840_030 Hb_003607_140 Hb_003607_140 Hb_000210_040--Hb_003607_140 Hb_004421_010 Hb_004421_010 Hb_000210_040--Hb_004421_010 Hb_003879_020 Hb_003879_020 Hb_000210_040--Hb_003879_020 Hb_000210_040--Hb_000659_040 Hb_005724_040 Hb_005724_040 Hb_002740_100--Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_002740_100--Hb_000181_230 Hb_005408_100 Hb_005408_100 Hb_002740_100--Hb_005408_100 Hb_002740_100--Hb_000326_080 Hb_003147_040 Hb_003147_040 Hb_000659_040--Hb_003147_040 Hb_000363_250 Hb_000363_250 Hb_000659_040--Hb_000363_250 Hb_000272_030 Hb_000272_030 Hb_000659_040--Hb_000272_030 Hb_000659_040--Hb_001318_100 Hb_000856_200 Hb_000856_200 Hb_000659_040--Hb_000856_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136492 6.91299 6.52094 10.5191 0.260089 0.357157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389569 0.95027 0.84569 4.89072 10.9557

CAGE analysis