Hb_001486_100

Information

Type -
Description -
Location Contig1486: 63890-67808
Sequence    

Annotation

kegg
ID rcu:RCOM_1120940
description tubulin alpha chain, putative
nr
ID XP_002525416.1
description tubulin alpha chain, putative [Ricinus communis]
swissprot
ID B9DHQ0
description Tubulin alpha-5 chain OS=Arabidopsis thaliana GN=TUBA5 PE=1 SV=2
trembl
ID B9SHE7
description Tubulin alpha chain, putative OS=Ricinus communis GN=RCOM_1120940 PE=3 SV=1
Gene Ontology
ID GO:0005618
description tubulin alpha-3 chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12228: 63924-67806 , PASA_asmbl_12229: 66466-66564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_100 0.0 - - tubulin alpha chain, putative [Ricinus communis]
2 Hb_006414_010 0.0875760738 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
3 Hb_002740_100 0.0924543898 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
4 Hb_000326_080 0.0994900043 - - lrr receptor protein kinase, putative [Ricinus communis]
5 Hb_002838_010 0.1089101807 - - AGPase large subunit protein [Hevea brasiliensis]
6 Hb_000917_210 0.1150274328 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003177_090 0.1160226492 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
8 Hb_006040_170 0.1161623598 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
9 Hb_001689_030 0.1187958701 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
10 Hb_000959_010 0.1207259033 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
11 Hb_000659_040 0.121627681 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
12 Hb_143629_200 0.124437864 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
13 Hb_002026_030 0.126383411 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_025045_010 0.1307543829 - - catalytic, putative [Ricinus communis]
15 Hb_008494_090 0.1310904688 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
16 Hb_007894_070 0.1333883608 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
17 Hb_002888_040 0.1341707511 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
18 Hb_000635_050 0.1346688334 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
19 Hb_000272_030 0.1348413676 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
20 Hb_002685_220 0.1357227243 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_100 Hb_001486_100 Hb_006414_010 Hb_006414_010 Hb_001486_100--Hb_006414_010 Hb_002740_100 Hb_002740_100 Hb_001486_100--Hb_002740_100 Hb_000326_080 Hb_000326_080 Hb_001486_100--Hb_000326_080 Hb_002838_010 Hb_002838_010 Hb_001486_100--Hb_002838_010 Hb_000917_210 Hb_000917_210 Hb_001486_100--Hb_000917_210 Hb_003177_090 Hb_003177_090 Hb_001486_100--Hb_003177_090 Hb_007894_070 Hb_007894_070 Hb_006414_010--Hb_007894_070 Hb_000800_010 Hb_000800_010 Hb_006414_010--Hb_000800_010 Hb_000210_040 Hb_000210_040 Hb_006414_010--Hb_000210_040 Hb_006414_010--Hb_002740_100 Hb_000659_040 Hb_000659_040 Hb_006414_010--Hb_000659_040 Hb_005724_040 Hb_005724_040 Hb_002740_100--Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_002740_100--Hb_000181_230 Hb_005408_100 Hb_005408_100 Hb_002740_100--Hb_005408_100 Hb_002740_100--Hb_000326_080 Hb_000252_260 Hb_000252_260 Hb_000326_080--Hb_000252_260 Hb_031862_120 Hb_031862_120 Hb_000326_080--Hb_031862_120 Hb_001951_230 Hb_001951_230 Hb_000326_080--Hb_001951_230 Hb_143871_010 Hb_143871_010 Hb_000326_080--Hb_143871_010 Hb_000941_090 Hb_000941_090 Hb_002838_010--Hb_000941_090 Hb_000272_030 Hb_000272_030 Hb_002838_010--Hb_000272_030 Hb_001143_120 Hb_001143_120 Hb_002838_010--Hb_001143_120 Hb_000260_410 Hb_000260_410 Hb_002838_010--Hb_000260_410 Hb_002838_010--Hb_000659_040 Hb_000594_130 Hb_000594_130 Hb_000917_210--Hb_000594_130 Hb_000130_480 Hb_000130_480 Hb_000917_210--Hb_000130_480 Hb_003145_010 Hb_003145_010 Hb_000917_210--Hb_003145_010 Hb_143629_200 Hb_143629_200 Hb_000917_210--Hb_143629_200 Hb_003607_140 Hb_003607_140 Hb_000917_210--Hb_003607_140 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_001689_030 Hb_001689_030 Hb_003177_090--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_003177_090--Hb_002344_080 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_003177_090--Hb_143629_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4183 46.3126 43.5853 66.7185 2.7512 2.58564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77184 1.27748 4.64661 30.6241 86.3973

CAGE analysis