Hb_000594_130

Information

Type -
Description -
Location Contig594: 170347-178295
Sequence    

Annotation

kegg
ID rcu:RCOM_0705610
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002524408.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ZQQ7
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=3 SV=1
trembl
ID B9SEI9
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0705610 PE=4 SV=1
Gene Ontology
ID GO:0005768
description leucine-rich repeat receptor-like serine threonine-protein kinase at2g14440 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000594_130 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000917_210 0.0943495464 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003177_090 0.1186001365 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
4 Hb_000130_480 0.1280590182 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
5 Hb_046117_030 0.1355880441 - - sialyltransferase, putative [Ricinus communis]
6 Hb_000237_160 0.1368952794 - - BEL1-like homeodomain protein 1 [Morus notabilis]
7 Hb_002110_090 0.1378861316 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
8 Hb_008494_090 0.140461012 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
9 Hb_002888_040 0.140498642 - - hypothetical protein B456_009G267200 [Gossypium raimondii]
10 Hb_001689_030 0.1405177111 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
11 Hb_002983_090 0.1423674709 - - Altered inheritance of mitochondria protein 32 [Glycine soja]
12 Hb_143629_200 0.1437024233 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
13 Hb_001054_060 0.144938914 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
14 Hb_000853_050 0.1456959905 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_003680_010 0.1465687107 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_003007_030 0.1470367124 - - -
17 Hb_001195_370 0.1474368595 - - -
18 Hb_000959_010 0.1486246918 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
19 Hb_000033_010 0.1493743019 - - Protein MLO, putative [Ricinus communis]
20 Hb_001468_040 0.1499214601 - - Uncharacterized protein TCM_024268 [Theobroma cacao]

Gene co-expression network

sample Hb_000594_130 Hb_000594_130 Hb_000917_210 Hb_000917_210 Hb_000594_130--Hb_000917_210 Hb_003177_090 Hb_003177_090 Hb_000594_130--Hb_003177_090 Hb_000130_480 Hb_000130_480 Hb_000594_130--Hb_000130_480 Hb_046117_030 Hb_046117_030 Hb_000594_130--Hb_046117_030 Hb_000237_160 Hb_000237_160 Hb_000594_130--Hb_000237_160 Hb_002110_090 Hb_002110_090 Hb_000594_130--Hb_002110_090 Hb_001486_100 Hb_001486_100 Hb_000917_210--Hb_001486_100 Hb_000917_210--Hb_000130_480 Hb_003145_010 Hb_003145_010 Hb_000917_210--Hb_003145_010 Hb_143629_200 Hb_143629_200 Hb_000917_210--Hb_143629_200 Hb_003607_140 Hb_003607_140 Hb_000917_210--Hb_003607_140 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_001689_030 Hb_001689_030 Hb_003177_090--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_003177_090--Hb_002344_080 Hb_000757_020 Hb_000757_020 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_003177_090--Hb_143629_200 Hb_002635_010 Hb_002635_010 Hb_000130_480--Hb_002635_010 Hb_006198_040 Hb_006198_040 Hb_000130_480--Hb_006198_040 Hb_004607_160 Hb_004607_160 Hb_000130_480--Hb_004607_160 Hb_124579_020 Hb_124579_020 Hb_000130_480--Hb_124579_020 Hb_003142_080 Hb_003142_080 Hb_000130_480--Hb_003142_080 Hb_000836_030 Hb_000836_030 Hb_000130_480--Hb_000836_030 Hb_000033_010 Hb_000033_010 Hb_046117_030--Hb_000033_010 Hb_046117_030--Hb_000130_480 Hb_002983_090 Hb_002983_090 Hb_046117_030--Hb_002983_090 Hb_046117_030--Hb_000237_160 Hb_094437_020 Hb_094437_020 Hb_046117_030--Hb_094437_020 Hb_000753_150 Hb_000753_150 Hb_000237_160--Hb_000753_150 Hb_003517_090 Hb_003517_090 Hb_000237_160--Hb_003517_090 Hb_000237_160--Hb_002983_090 Hb_000237_160--Hb_003177_090 Hb_000237_170 Hb_000237_170 Hb_000237_160--Hb_000237_170 Hb_000959_010 Hb_000959_010 Hb_000237_160--Hb_000959_010 Hb_001269_520 Hb_001269_520 Hb_002110_090--Hb_001269_520 Hb_000251_050 Hb_000251_050 Hb_002110_090--Hb_000251_050 Hb_002110_090--Hb_003177_090 Hb_000107_550 Hb_000107_550 Hb_002110_090--Hb_000107_550 Hb_000181_230 Hb_000181_230 Hb_002110_090--Hb_000181_230 Hb_002099_060 Hb_002099_060 Hb_002110_090--Hb_002099_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183872 3.26469 3.50122 4.02144 0.382332 0.305222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0902888 0.296041 0.113194 4.50977 9.82189

CAGE analysis