Hb_003517_090

Information

Type -
Description -
Location Contig3517: 122033-126685
Sequence    

Annotation

kegg
ID rcu:RCOM_0047440
description RNA binding protein, putative
nr
ID XP_012070977.1
description PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SJ41
description Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1
trembl
ID A0A067KT06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00999 PE=4 SV=1
Gene Ontology
ID GO:0000166
description zinc finger ccch domain-containing protein 18-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36541: 122280-124203 , PASA_asmbl_36542: 125492-125803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003517_090 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
2 Hb_000237_160 0.1106099347 - - BEL1-like homeodomain protein 1 [Morus notabilis]
3 Hb_000363_050 0.1184730533 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
4 Hb_083242_020 0.1272955799 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
5 Hb_001514_150 0.1305291323 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
6 Hb_011472_050 0.131427347 - - -
7 Hb_004605_020 0.1353204696 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
8 Hb_004007_230 0.1360552936 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
9 Hb_003177_090 0.1373795723 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
10 Hb_001357_360 0.1378511877 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000753_150 0.138179368 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
12 Hb_027337_030 0.1415150033 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
13 Hb_003007_030 0.1427730291 - - -
14 Hb_001836_010 0.1449776037 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
15 Hb_000767_010 0.1454086174 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
16 Hb_004994_200 0.1459056933 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
17 Hb_002110_110 0.1516728704 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
18 Hb_002818_070 0.1532062213 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_003077_140 0.153982559 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
20 Hb_042463_060 0.155445013 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003517_090 Hb_003517_090 Hb_000237_160 Hb_000237_160 Hb_003517_090--Hb_000237_160 Hb_000363_050 Hb_000363_050 Hb_003517_090--Hb_000363_050 Hb_083242_020 Hb_083242_020 Hb_003517_090--Hb_083242_020 Hb_001514_150 Hb_001514_150 Hb_003517_090--Hb_001514_150 Hb_011472_050 Hb_011472_050 Hb_003517_090--Hb_011472_050 Hb_004605_020 Hb_004605_020 Hb_003517_090--Hb_004605_020 Hb_000753_150 Hb_000753_150 Hb_000237_160--Hb_000753_150 Hb_002983_090 Hb_002983_090 Hb_000237_160--Hb_002983_090 Hb_003177_090 Hb_003177_090 Hb_000237_160--Hb_003177_090 Hb_000237_170 Hb_000237_170 Hb_000237_160--Hb_000237_170 Hb_000959_010 Hb_000959_010 Hb_000237_160--Hb_000959_010 Hb_000049_290 Hb_000049_290 Hb_000363_050--Hb_000049_290 Hb_010055_020 Hb_010055_020 Hb_000363_050--Hb_010055_020 Hb_022487_010 Hb_022487_010 Hb_000363_050--Hb_022487_010 Hb_004324_220 Hb_004324_220 Hb_000363_050--Hb_004324_220 Hb_004143_140 Hb_004143_140 Hb_000363_050--Hb_004143_140 Hb_027337_030 Hb_027337_030 Hb_083242_020--Hb_027337_030 Hb_003007_030 Hb_003007_030 Hb_083242_020--Hb_003007_030 Hb_000418_150 Hb_000418_150 Hb_083242_020--Hb_000418_150 Hb_083242_020--Hb_004605_020 Hb_000757_020 Hb_000757_020 Hb_083242_020--Hb_000757_020 Hb_003913_040 Hb_003913_040 Hb_001514_150--Hb_003913_040 Hb_000009_390 Hb_000009_390 Hb_001514_150--Hb_000009_390 Hb_006588_020 Hb_006588_020 Hb_001514_150--Hb_006588_020 Hb_005092_090 Hb_005092_090 Hb_001514_150--Hb_005092_090 Hb_001836_010 Hb_001836_010 Hb_001514_150--Hb_001836_010 Hb_007035_010 Hb_007035_010 Hb_001514_150--Hb_007035_010 Hb_010565_030 Hb_010565_030 Hb_011472_050--Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_011472_050--Hb_005542_010 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_001366_260 Hb_001366_260 Hb_011472_050--Hb_001366_260 Hb_000173_110 Hb_000173_110 Hb_011472_050--Hb_000173_110 Hb_009434_060 Hb_009434_060 Hb_011472_050--Hb_009434_060 Hb_061908_020 Hb_061908_020 Hb_004605_020--Hb_061908_020 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_006618_020 Hb_006618_020 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_004605_020--Hb_062229_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50526 32.5407 9.93358 15.5155 0.396135 1.04448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305814 0.842253 0.306063 13.3432 46.0735

CAGE analysis