Hb_083242_020

Information

Type -
Description -
Location Contig83242: 24484-27073
Sequence    

Annotation

kegg
ID rcu:RCOM_0087290
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.13)
nr
ID KDP27677.1
description hypothetical protein JCGZ_20097 [Jatropha curcas]
swissprot
ID Q9SCZ4
description Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1
trembl
ID A0A067JUU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20097 PE=4 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase feronia

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59862: 25224-25750 , PASA_asmbl_59863: 26294-27078
cDNA
(Sanger)
(ID:Location)		 030_E10.ab1: 26355-27078 , 050_D08.ab1: 26294-27078

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083242_020 0.0 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
2 Hb_027337_030 0.1005135634 - - PREDICTED: uncharacterized protein LOC104602841 [Nelumbo nucifera]
3 Hb_003007_030 0.1206855263 - - -
4 Hb_003517_090 0.1272955799 - - PREDICTED: zinc finger CCCH domain-containing protein 18-like isoform X2 [Jatropha curcas]
5 Hb_000418_150 0.1294427565 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_004605_020 0.1305432437 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
7 Hb_000757_020 0.1332337925 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
8 Hb_003177_090 0.141336505 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
9 Hb_001357_360 0.1446567934 - - zinc finger protein, putative [Ricinus communis]
10 Hb_000261_320 0.1457400137 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_000816_160 0.1521483665 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
12 Hb_000522_010 0.1521767187 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
13 Hb_004785_200 0.1522585897 - - PREDICTED: protein MKS1 [Jatropha curcas]
14 Hb_005470_040 0.1550750681 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
15 Hb_001496_120 0.1553998196 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
16 Hb_031862_200 0.157956392 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
17 Hb_003077_140 0.1582987879 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
18 Hb_002110_110 0.1598836568 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
19 Hb_061908_020 0.1603113825 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_003517_100 0.1608912482 transcription factor TF Family: GRAS -

Gene co-expression network

sample Hb_083242_020 Hb_083242_020 Hb_027337_030 Hb_027337_030 Hb_083242_020--Hb_027337_030 Hb_003007_030 Hb_003007_030 Hb_083242_020--Hb_003007_030 Hb_003517_090 Hb_003517_090 Hb_083242_020--Hb_003517_090 Hb_000418_150 Hb_000418_150 Hb_083242_020--Hb_000418_150 Hb_004605_020 Hb_004605_020 Hb_083242_020--Hb_004605_020 Hb_000757_020 Hb_000757_020 Hb_083242_020--Hb_000757_020 Hb_027337_030--Hb_004605_020 Hb_061908_020 Hb_061908_020 Hb_027337_030--Hb_061908_020 Hb_004007_230 Hb_004007_230 Hb_027337_030--Hb_004007_230 Hb_004032_330 Hb_004032_330 Hb_027337_030--Hb_004032_330 Hb_002110_110 Hb_002110_110 Hb_027337_030--Hb_002110_110 Hb_001476_090 Hb_001476_090 Hb_003007_030--Hb_001476_090 Hb_001689_030 Hb_001689_030 Hb_003007_030--Hb_001689_030 Hb_003007_030--Hb_000418_150 Hb_000816_160 Hb_000816_160 Hb_003007_030--Hb_000816_160 Hb_003177_090 Hb_003177_090 Hb_003007_030--Hb_003177_090 Hb_000237_160 Hb_000237_160 Hb_003517_090--Hb_000237_160 Hb_000363_050 Hb_000363_050 Hb_003517_090--Hb_000363_050 Hb_001514_150 Hb_001514_150 Hb_003517_090--Hb_001514_150 Hb_011472_050 Hb_011472_050 Hb_003517_090--Hb_011472_050 Hb_003517_090--Hb_004605_020 Hb_000438_020 Hb_000438_020 Hb_000418_150--Hb_000438_020 Hb_000418_150--Hb_000757_020 Hb_004864_020 Hb_004864_020 Hb_000418_150--Hb_004864_020 Hb_000418_150--Hb_003177_090 Hb_001496_120 Hb_001496_120 Hb_000418_150--Hb_001496_120 Hb_002099_060 Hb_002099_060 Hb_000418_150--Hb_002099_060 Hb_004605_020--Hb_061908_020 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_006618_020 Hb_006618_020 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_004605_020--Hb_062229_010 Hb_049293_010 Hb_049293_010 Hb_000757_020--Hb_049293_010 Hb_000757_020--Hb_003177_090 Hb_155150_010 Hb_155150_010 Hb_000757_020--Hb_155150_010 Hb_000714_120 Hb_000714_120 Hb_000757_020--Hb_000714_120 Hb_000366_030 Hb_000366_030 Hb_000757_020--Hb_000366_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46085 12.9994 4.63916 5.22042 0.419637 0.723197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.292221 0.028735 0 8.84971 16.1914

CAGE analysis