Hb_062229_010

Information

Type -
Description -
Location Contig62229: 56-1079
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062229_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_001391_100 0.0632406433 - - AMP dependent ligase, putative [Ricinus communis]
3 Hb_061908_020 0.1036752718 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_004605_020 0.1247942265 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
5 Hb_043939_010 0.1311818271 - - hypothetical protein B456_N011100 [Gossypium raimondii]
6 Hb_000197_230 0.1397342178 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
7 Hb_010261_030 0.1402927984 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_000261_320 0.1410930116 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_002739_070 0.142593859 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
10 Hb_002218_070 0.1458581779 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
11 Hb_002003_040 0.1471564155 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
12 Hb_002739_060 0.1492764574 - - -
13 Hb_155150_010 0.1493223175 - - kinase, putative [Ricinus communis]
14 Hb_001408_150 0.1505184407 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
15 Hb_001071_060 0.1538756193 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
16 Hb_060909_010 0.1539277772 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
17 Hb_000450_180 0.1541088349 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_000100_210 0.1541114952 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
19 Hb_006618_020 0.155044626 - - Vacuolar-processing enzyme precursor [Ricinus communis]
20 Hb_000808_160 0.1560921805 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]

Gene co-expression network

sample Hb_062229_010 Hb_062229_010 Hb_001391_100 Hb_001391_100 Hb_062229_010--Hb_001391_100 Hb_061908_020 Hb_061908_020 Hb_062229_010--Hb_061908_020 Hb_004605_020 Hb_004605_020 Hb_062229_010--Hb_004605_020 Hb_043939_010 Hb_043939_010 Hb_062229_010--Hb_043939_010 Hb_000197_230 Hb_000197_230 Hb_062229_010--Hb_000197_230 Hb_010261_030 Hb_010261_030 Hb_062229_010--Hb_010261_030 Hb_001391_100--Hb_061908_020 Hb_001391_100--Hb_000197_230 Hb_000261_320 Hb_000261_320 Hb_001391_100--Hb_000261_320 Hb_002003_040 Hb_002003_040 Hb_001391_100--Hb_002003_040 Hb_001391_100--Hb_004605_020 Hb_061908_020--Hb_004605_020 Hb_172676_010 Hb_172676_010 Hb_061908_020--Hb_172676_010 Hb_027337_030 Hb_027337_030 Hb_061908_020--Hb_027337_030 Hb_006618_020 Hb_006618_020 Hb_061908_020--Hb_006618_020 Hb_004605_020--Hb_027337_030 Hb_002217_070 Hb_002217_070 Hb_004605_020--Hb_002217_070 Hb_004605_020--Hb_006618_020 Hb_002609_130 Hb_002609_130 Hb_004605_020--Hb_002609_130 Hb_000563_120 Hb_000563_120 Hb_043939_010--Hb_000563_120 Hb_006615_190 Hb_006615_190 Hb_043939_010--Hb_006615_190 Hb_014361_130 Hb_014361_130 Hb_043939_010--Hb_014361_130 Hb_000172_010 Hb_000172_010 Hb_043939_010--Hb_000172_010 Hb_009247_030 Hb_009247_030 Hb_043939_010--Hb_009247_030 Hb_001071_060 Hb_001071_060 Hb_000197_230--Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_000197_230--Hb_001832_210 Hb_010605_010 Hb_010605_010 Hb_000197_230--Hb_010605_010 Hb_002833_020 Hb_002833_020 Hb_000197_230--Hb_002833_020 Hb_000100_210 Hb_000100_210 Hb_000197_230--Hb_000100_210 Hb_117840_010 Hb_117840_010 Hb_010261_030--Hb_117840_010 Hb_010261_030--Hb_002609_130 Hb_005155_010 Hb_005155_010 Hb_010261_030--Hb_005155_010 Hb_002218_070 Hb_002218_070 Hb_010261_030--Hb_002218_070 Hb_001971_020 Hb_001971_020 Hb_010261_030--Hb_001971_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02749 14.743 2.82317 6.0869 0.396975 1.43794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.110131 0.0433058 0.0793467 6.87322 7.3167

CAGE analysis