Hb_043939_010

Information

Type -
Description -
Location Contig43939: 2273-4554
Sequence    

Annotation

kegg
ID mdm:103432863
description probable LRR receptor-like serine/threonine-protein kinase At1g56140
nr
ID KJB84217.1
description hypothetical protein B456_N011100 [Gossypium raimondii]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID A0A0D2VLK3
description Gossypium raimondii unplaced genomic scaffold scaffold_29, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_N011100 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at1g56140

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42594: 4186-4306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043939_010 0.0 - - hypothetical protein B456_N011100 [Gossypium raimondii]
2 Hb_000563_120 0.1309949539 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
3 Hb_062229_010 0.1311818271 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_006615_190 0.1355563579 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
5 Hb_014361_130 0.1407683765 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
6 Hb_000172_010 0.14405902 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
7 Hb_009247_030 0.1441386344 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
8 Hb_002329_030 0.1454939851 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
9 Hb_007237_090 0.149297795 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002600_010 0.1507642134 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
11 Hb_001971_020 0.1520298116 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
12 Hb_002272_070 0.1521147343 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
13 Hb_001391_100 0.1540626526 - - AMP dependent ligase, putative [Ricinus communis]
14 Hb_000603_120 0.1564629594 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
15 Hb_084127_010 0.158029031 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000579_220 0.1610609121 - - transcription factor, putative [Ricinus communis]
17 Hb_117840_010 0.1619469384 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_009581_040 0.1631520224 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
19 Hb_000072_160 0.1634938766 - - proline oxidase [Manihot esculenta]
20 Hb_000383_020 0.1636887092 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_043939_010 Hb_043939_010 Hb_000563_120 Hb_000563_120 Hb_043939_010--Hb_000563_120 Hb_062229_010 Hb_062229_010 Hb_043939_010--Hb_062229_010 Hb_006615_190 Hb_006615_190 Hb_043939_010--Hb_006615_190 Hb_014361_130 Hb_014361_130 Hb_043939_010--Hb_014361_130 Hb_000172_010 Hb_000172_010 Hb_043939_010--Hb_000172_010 Hb_009247_030 Hb_009247_030 Hb_043939_010--Hb_009247_030 Hb_114310_050 Hb_114310_050 Hb_000563_120--Hb_114310_050 Hb_001971_020 Hb_001971_020 Hb_000563_120--Hb_001971_020 Hb_000649_280 Hb_000649_280 Hb_000563_120--Hb_000649_280 Hb_000377_160 Hb_000377_160 Hb_000563_120--Hb_000377_160 Hb_001085_230 Hb_001085_230 Hb_000563_120--Hb_001085_230 Hb_009803_030 Hb_009803_030 Hb_000563_120--Hb_009803_030 Hb_001391_100 Hb_001391_100 Hb_062229_010--Hb_001391_100 Hb_061908_020 Hb_061908_020 Hb_062229_010--Hb_061908_020 Hb_004605_020 Hb_004605_020 Hb_062229_010--Hb_004605_020 Hb_000197_230 Hb_000197_230 Hb_062229_010--Hb_000197_230 Hb_010261_030 Hb_010261_030 Hb_062229_010--Hb_010261_030 Hb_007237_090 Hb_007237_090 Hb_006615_190--Hb_007237_090 Hb_084127_010 Hb_084127_010 Hb_006615_190--Hb_084127_010 Hb_000579_220 Hb_000579_220 Hb_006615_190--Hb_000579_220 Hb_000072_160 Hb_000072_160 Hb_006615_190--Hb_000072_160 Hb_006615_190--Hb_000172_010 Hb_002329_030 Hb_002329_030 Hb_006615_190--Hb_002329_030 Hb_014361_130--Hb_000072_160 Hb_014361_130--Hb_002329_030 Hb_002272_070 Hb_002272_070 Hb_014361_130--Hb_002272_070 Hb_145139_010 Hb_145139_010 Hb_014361_130--Hb_145139_010 Hb_014361_130--Hb_009247_030 Hb_066320_010 Hb_066320_010 Hb_014361_130--Hb_066320_010 Hb_000172_010--Hb_000579_220 Hb_000172_010--Hb_007237_090 Hb_001879_050 Hb_001879_050 Hb_000172_010--Hb_001879_050 Hb_000172_010--Hb_000072_160 Hb_000172_010--Hb_084127_010 Hb_002239_020 Hb_002239_020 Hb_009247_030--Hb_002239_020 Hb_002097_210 Hb_002097_210 Hb_009247_030--Hb_002097_210 Hb_002571_010 Hb_002571_010 Hb_009247_030--Hb_002571_010 Hb_009247_030--Hb_000072_160 Hb_000819_010 Hb_000819_010 Hb_009247_030--Hb_000819_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118923 3.25142 0.287838 1.19724 0 0.166975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.58272 1.14861

CAGE analysis