Hb_002571_010

Information

Type -
Description -
Location Contig2571: 15228-24971
Sequence    

Annotation

kegg
ID rcu:RCOM_1321230
description cationic amino acid transporter, putative
nr
ID XP_002525690.1
description cationic amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9ASS7
description Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=2 SV=1
trembl
ID B9SI71
description Cationic amino acid transporter, putative OS=Ricinus communis GN=RCOM_1321230 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cationic amino acid transporter vacuolar-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26750: 21940-24838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002571_010 0.0 - - cationic amino acid transporter, putative [Ricinus communis]
2 Hb_000808_160 0.0763959286 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
3 Hb_009247_030 0.1235855787 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_001879_050 0.126539158 - - Disease resistance protein RFL1, putative [Ricinus communis]
5 Hb_000172_080 0.12917642 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
6 Hb_001754_200 0.1294106807 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
7 Hb_004166_010 0.1314478775 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
8 Hb_000976_340 0.1318899466 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_006198_060 0.1323429778 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
10 Hb_000094_010 0.1342358216 - - lrr receptor protein kinase, putative [Ricinus communis]
11 Hb_000522_130 0.1343766261 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
12 Hb_002329_030 0.1347417295 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
13 Hb_000061_100 0.1369201743 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
14 Hb_014361_130 0.1404632275 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
15 Hb_006052_040 0.1446838938 - - pyruvate decarboxylase [Hevea brasiliensis]
16 Hb_017604_020 0.1453090031 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
17 Hb_008253_040 0.145581647 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
18 Hb_002600_010 0.1460446359 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
19 Hb_000984_100 0.1460827581 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_000072_160 0.1465905539 - - proline oxidase [Manihot esculenta]

Gene co-expression network

sample Hb_002571_010 Hb_002571_010 Hb_000808_160 Hb_000808_160 Hb_002571_010--Hb_000808_160 Hb_009247_030 Hb_009247_030 Hb_002571_010--Hb_009247_030 Hb_001879_050 Hb_001879_050 Hb_002571_010--Hb_001879_050 Hb_000172_080 Hb_000172_080 Hb_002571_010--Hb_000172_080 Hb_001754_200 Hb_001754_200 Hb_002571_010--Hb_001754_200 Hb_004166_010 Hb_004166_010 Hb_002571_010--Hb_004166_010 Hb_017604_020 Hb_017604_020 Hb_000808_160--Hb_017604_020 Hb_000522_130 Hb_000522_130 Hb_000808_160--Hb_000522_130 Hb_000094_010 Hb_000094_010 Hb_000808_160--Hb_000094_010 Hb_000976_340 Hb_000976_340 Hb_000808_160--Hb_000976_340 Hb_001699_050 Hb_001699_050 Hb_000808_160--Hb_001699_050 Hb_002239_020 Hb_002239_020 Hb_009247_030--Hb_002239_020 Hb_014361_130 Hb_014361_130 Hb_009247_030--Hb_014361_130 Hb_002097_210 Hb_002097_210 Hb_009247_030--Hb_002097_210 Hb_000072_160 Hb_000072_160 Hb_009247_030--Hb_000072_160 Hb_000819_010 Hb_000819_010 Hb_009247_030--Hb_000819_010 Hb_000172_010 Hb_000172_010 Hb_001879_050--Hb_000172_010 Hb_000984_100 Hb_000984_100 Hb_001879_050--Hb_000984_100 Hb_002609_150 Hb_002609_150 Hb_001879_050--Hb_002609_150 Hb_001148_040 Hb_001148_040 Hb_001879_050--Hb_001148_040 Hb_000579_220 Hb_000579_220 Hb_001879_050--Hb_000579_220 Hb_000359_080 Hb_000359_080 Hb_000172_080--Hb_000359_080 Hb_000172_080--Hb_004166_010 Hb_078901_010 Hb_078901_010 Hb_000172_080--Hb_078901_010 Hb_008253_040 Hb_008253_040 Hb_000172_080--Hb_008253_040 Hb_001345_030 Hb_001345_030 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010 Hb_001754_200--Hb_000094_010 Hb_003914_050 Hb_003914_050 Hb_001754_200--Hb_003914_050 Hb_001754_200--Hb_000522_130 Hb_033312_090 Hb_033312_090 Hb_001754_200--Hb_033312_090 Hb_065525_010 Hb_065525_010 Hb_001754_200--Hb_065525_010 Hb_001863_450 Hb_001863_450 Hb_004166_010--Hb_001863_450 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004166_010--Hb_008253_040 Hb_004466_070 Hb_004466_070 Hb_004166_010--Hb_004466_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.6235 49.5156 5.87559 16.7683 0.548637 1.41446
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.74998 0.462883 0.708215 10.9383 12.6137

CAGE analysis