Hb_001863_450

Information

Type -
Description -
Location Contig1863: 367404-372178
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09730g
description POPTRDRAFT_830225; cryptochrome 1 family protein
nr
ID AEK26572.1
description cryptochrome 1.2 [Populus tremula]
swissprot
ID Q43125
description Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
trembl
ID G1FMC8
description Cryptochrome 1.2 OS=Populus tremula GN=CRY1.2 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cryptochrome 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18376: 367364-371972 , PASA_asmbl_18377: 367364-368198 , PASA_asmbl_18378: 367604-368213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_450 0.0 - - cryptochrome 1.2 [Populus tremula]
2 Hb_004166_010 0.0850200396 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
3 Hb_004466_070 0.0913087089 - - hypothetical protein RCOM_1447500 [Ricinus communis]
4 Hb_003371_140 0.1225703635 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
5 Hb_033642_070 0.1377852516 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
6 Hb_008253_040 0.1378336946 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
7 Hb_000172_080 0.1478387995 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
8 Hb_072276_010 0.1481140622 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
9 Hb_000061_100 0.1498904294 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
10 Hb_000126_040 0.1507095348 - - kinase, putative [Ricinus communis]
11 Hb_001921_010 0.1509541125 - - ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_000544_020 0.1526779864 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_158696_010 0.1558999035 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
14 Hb_126103_010 0.1585465912 - - Phosphoprotein phosphatase [Theobroma cacao]
15 Hb_002571_010 0.1585547298 - - cationic amino acid transporter, putative [Ricinus communis]
16 Hb_000333_120 0.1599434952 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
17 Hb_002475_130 0.161083115 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
18 Hb_000221_060 0.1613974502 - - -
19 Hb_000803_060 0.1624517192 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
20 Hb_001248_110 0.1639415583 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_001863_450 Hb_001863_450 Hb_004166_010 Hb_004166_010 Hb_001863_450--Hb_004166_010 Hb_004466_070 Hb_004466_070 Hb_001863_450--Hb_004466_070 Hb_003371_140 Hb_003371_140 Hb_001863_450--Hb_003371_140 Hb_033642_070 Hb_033642_070 Hb_001863_450--Hb_033642_070 Hb_008253_040 Hb_008253_040 Hb_001863_450--Hb_008253_040 Hb_000172_080 Hb_000172_080 Hb_001863_450--Hb_000172_080 Hb_004166_010--Hb_000172_080 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004166_010--Hb_008253_040 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010 Hb_158696_010 Hb_158696_010 Hb_004466_070--Hb_158696_010 Hb_001248_110 Hb_001248_110 Hb_004466_070--Hb_001248_110 Hb_004466_070--Hb_033642_070 Hb_004466_070--Hb_003371_140 Hb_126103_010 Hb_126103_010 Hb_003371_140--Hb_126103_010 Hb_006501_170 Hb_006501_170 Hb_003371_140--Hb_006501_170 Hb_000589_220 Hb_000589_220 Hb_003371_140--Hb_000589_220 Hb_003142_090 Hb_003142_090 Hb_003371_140--Hb_003142_090 Hb_003126_020 Hb_003126_020 Hb_033642_070--Hb_003126_020 Hb_033642_070--Hb_158696_010 Hb_001662_170 Hb_001662_170 Hb_033642_070--Hb_001662_170 Hb_056012_010 Hb_056012_010 Hb_033642_070--Hb_056012_010 Hb_000856_410 Hb_000856_410 Hb_008253_040--Hb_000856_410 Hb_008253_040--Hb_000172_080 Hb_004030_070 Hb_004030_070 Hb_008253_040--Hb_004030_070 Hb_001345_030 Hb_001345_030 Hb_008253_040--Hb_001345_030 Hb_000359_080 Hb_000359_080 Hb_000172_080--Hb_000359_080 Hb_078901_010 Hb_078901_010 Hb_000172_080--Hb_078901_010 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.48917 140.389 18.1204 21.926 3.94748 8.32113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.93637 2.00621 2.6672 28.3975 29.8217

CAGE analysis