Hb_000061_100

Information

Type -
Description -
Location Contig61: 97824-100098
Sequence    

Annotation

kegg
ID cic:CICLE_v100190921m
description hypothetical protein
nr
ID KDO55520.1
description hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067ENP9
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0053742mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50906: 100614-101116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_100 0.0 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
2 Hb_004166_010 0.1081438036 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
3 Hb_000808_160 0.1256635398 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
4 Hb_002571_010 0.1369201743 - - cationic amino acid transporter, putative [Ricinus communis]
5 Hb_000172_080 0.1385016553 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
6 Hb_000363_110 0.1410670453 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
7 Hb_000995_010 0.1434661784 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
8 Hb_006198_060 0.1486604417 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
9 Hb_001863_450 0.1498904294 - - cryptochrome 1.2 [Populus tremula]
10 Hb_008253_040 0.152475766 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_086002_010 0.156138616 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_000116_350 0.1585872792 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
13 Hb_000522_130 0.1586187903 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
14 Hb_001345_030 0.1596425833 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
15 Hb_000397_090 0.1615104534 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
16 Hb_004466_070 0.1634782574 - - hypothetical protein RCOM_1447500 [Ricinus communis]
17 Hb_000359_080 0.1645668101 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
18 Hb_098160_010 0.1649479338 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
19 Hb_006618_020 0.1677738956 - - Vacuolar-processing enzyme precursor [Ricinus communis]
20 Hb_006052_040 0.1685324815 - - pyruvate decarboxylase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000061_100 Hb_000061_100 Hb_004166_010 Hb_004166_010 Hb_000061_100--Hb_004166_010 Hb_000808_160 Hb_000808_160 Hb_000061_100--Hb_000808_160 Hb_002571_010 Hb_002571_010 Hb_000061_100--Hb_002571_010 Hb_000172_080 Hb_000172_080 Hb_000061_100--Hb_000172_080 Hb_000363_110 Hb_000363_110 Hb_000061_100--Hb_000363_110 Hb_000995_010 Hb_000995_010 Hb_000061_100--Hb_000995_010 Hb_001863_450 Hb_001863_450 Hb_004166_010--Hb_001863_450 Hb_004166_010--Hb_000172_080 Hb_008253_040 Hb_008253_040 Hb_004166_010--Hb_008253_040 Hb_004466_070 Hb_004466_070 Hb_004166_010--Hb_004466_070 Hb_004166_010--Hb_002571_010 Hb_000808_160--Hb_002571_010 Hb_017604_020 Hb_017604_020 Hb_000808_160--Hb_017604_020 Hb_000522_130 Hb_000522_130 Hb_000808_160--Hb_000522_130 Hb_000094_010 Hb_000094_010 Hb_000808_160--Hb_000094_010 Hb_000976_340 Hb_000976_340 Hb_000808_160--Hb_000976_340 Hb_001699_050 Hb_001699_050 Hb_000808_160--Hb_001699_050 Hb_009247_030 Hb_009247_030 Hb_002571_010--Hb_009247_030 Hb_001879_050 Hb_001879_050 Hb_002571_010--Hb_001879_050 Hb_002571_010--Hb_000172_080 Hb_001754_200 Hb_001754_200 Hb_002571_010--Hb_001754_200 Hb_000359_080 Hb_000359_080 Hb_000172_080--Hb_000359_080 Hb_078901_010 Hb_078901_010 Hb_000172_080--Hb_078901_010 Hb_000172_080--Hb_008253_040 Hb_001345_030 Hb_001345_030 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010 Hb_000397_090 Hb_000397_090 Hb_000363_110--Hb_000397_090 Hb_000363_110--Hb_001345_030 Hb_002234_200 Hb_002234_200 Hb_000363_110--Hb_002234_200 Hb_013607_010 Hb_013607_010 Hb_000363_110--Hb_013607_010 Hb_000363_110--Hb_098160_010 Hb_000003_420 Hb_000003_420 Hb_000363_110--Hb_000003_420 Hb_000995_010--Hb_000808_160 Hb_000995_010--Hb_001699_050 Hb_000995_010--Hb_098160_010 Hb_003106_180 Hb_003106_180 Hb_000995_010--Hb_003106_180 Hb_001405_060 Hb_001405_060 Hb_000995_010--Hb_001405_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0906589 3.52435 0.567796 0.957153 0.0375734 0.127597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.185398 0 0 0.44674 0.711321

CAGE analysis