Hb_004466_070

Information

Type -
Description -
Location Contig4466: 101031-108266
Sequence    

Annotation

kegg
ID rcu:RCOM_1447500
description hypothetical protein
nr
ID XP_002512923.1
description hypothetical protein RCOM_1447500 [Ricinus communis]
swissprot
ID Q84V03
description F-box protein At2g16365 OS=Arabidopsis thaliana GN=At2g16365 PE=2 SV=2
trembl
ID B9RH64
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43075: 101660-106900 , PASA_asmbl_43076: 104195-104710 , PASA_asmbl_43077: 104745-105169
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004466_070 0.0 - - hypothetical protein RCOM_1447500 [Ricinus communis]
2 Hb_001863_450 0.0913087089 - - cryptochrome 1.2 [Populus tremula]
3 Hb_158696_010 0.1247616308 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
4 Hb_001248_110 0.1255627544 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_004166_010 0.1263653585 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
6 Hb_033642_070 0.1392376997 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
7 Hb_003371_140 0.1444752198 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
8 Hb_000803_060 0.1472392318 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
9 Hb_000544_020 0.1493116717 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
10 Hb_001608_030 0.1500128251 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
11 Hb_001921_010 0.153087168 - - ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_010080_020 0.1554410798 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
13 Hb_002686_400 0.1569866153 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
14 Hb_004648_100 0.1582834823 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
15 Hb_000107_440 0.1593175679 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
16 Hb_000984_100 0.1593959351 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_004976_040 0.1598264958 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
18 Hb_001879_050 0.159984839 - - Disease resistance protein RFL1, putative [Ricinus communis]
19 Hb_060909_010 0.1623540371 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
20 Hb_002571_010 0.1628737272 - - cationic amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004466_070 Hb_004466_070 Hb_001863_450 Hb_001863_450 Hb_004466_070--Hb_001863_450 Hb_158696_010 Hb_158696_010 Hb_004466_070--Hb_158696_010 Hb_001248_110 Hb_001248_110 Hb_004466_070--Hb_001248_110 Hb_004166_010 Hb_004166_010 Hb_004466_070--Hb_004166_010 Hb_033642_070 Hb_033642_070 Hb_004466_070--Hb_033642_070 Hb_003371_140 Hb_003371_140 Hb_004466_070--Hb_003371_140 Hb_001863_450--Hb_004166_010 Hb_001863_450--Hb_003371_140 Hb_001863_450--Hb_033642_070 Hb_008253_040 Hb_008253_040 Hb_001863_450--Hb_008253_040 Hb_000172_080 Hb_000172_080 Hb_001863_450--Hb_000172_080 Hb_004106_010 Hb_004106_010 Hb_158696_010--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_158696_010--Hb_012787_040 Hb_001662_170 Hb_001662_170 Hb_158696_010--Hb_001662_170 Hb_003752_120 Hb_003752_120 Hb_158696_010--Hb_003752_120 Hb_093177_010 Hb_093177_010 Hb_158696_010--Hb_093177_010 Hb_004631_110 Hb_004631_110 Hb_158696_010--Hb_004631_110 Hb_000544_020 Hb_000544_020 Hb_001248_110--Hb_000544_020 Hb_000566_190 Hb_000566_190 Hb_001248_110--Hb_000566_190 Hb_001608_030 Hb_001608_030 Hb_001248_110--Hb_001608_030 Hb_042553_010 Hb_042553_010 Hb_001248_110--Hb_042553_010 Hb_001248_110--Hb_158696_010 Hb_004166_010--Hb_000172_080 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004166_010--Hb_008253_040 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010 Hb_003126_020 Hb_003126_020 Hb_033642_070--Hb_003126_020 Hb_033642_070--Hb_158696_010 Hb_033642_070--Hb_001662_170 Hb_056012_010 Hb_056012_010 Hb_033642_070--Hb_056012_010 Hb_126103_010 Hb_126103_010 Hb_003371_140--Hb_126103_010 Hb_006501_170 Hb_006501_170 Hb_003371_140--Hb_006501_170 Hb_000589_220 Hb_000589_220 Hb_003371_140--Hb_000589_220 Hb_003142_090 Hb_003142_090 Hb_003371_140--Hb_003142_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.13549 219.386 26.3373 48.5781 8.95548 15.31
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7577 2.7814 3.75608 55.1628 27.7684

CAGE analysis