Hb_003142_090

Information

Type -
Description -
Location Contig3142: 81434-103626
Sequence    

Annotation

kegg
ID tcc:TCM_015372
description Kinase, putative
nr
ID XP_007038999.1
description Kinase, putative isoform 2 [Theobroma cacao]
swissprot
ID Q9XEC7
description Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana GN=CRK37 PE=3 SV=1
trembl
ID A0A061G0W2
description Kinase, putative isoform 2 OS=Theobroma cacao GN=TCM_015370 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33218: 93370-93672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_090 0.0 - - Kinase, putative isoform 2 [Theobroma cacao]
2 Hb_000067_030 0.1326288822 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
3 Hb_003371_140 0.1540182335 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
4 Hb_006501_170 0.1541788712 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
5 Hb_061350_010 0.1743839423 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
6 Hb_002518_270 0.1797944305 - - glycogen phosphorylase, putative [Ricinus communis]
7 Hb_000126_040 0.1841318099 - - kinase, putative [Ricinus communis]
8 Hb_001754_200 0.1860686019 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
9 Hb_006718_040 0.1865637574 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
10 Hb_003106_210 0.1882535128 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
11 Hb_000668_160 0.1899727768 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
12 Hb_011214_140 0.192422806 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_001921_010 0.1926277326 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_002218_070 0.1927411245 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
15 Hb_001140_320 0.193807399 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
16 Hb_073119_010 0.1995493817 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_004965_060 0.2000358691 - - PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Jatropha curcas]
18 Hb_000819_010 0.2020712566 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
19 Hb_001195_730 0.2049456975 - - PREDICTED: protein LYK5-like [Jatropha curcas]
20 Hb_008948_080 0.2073504584 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003142_090 Hb_003142_090 Hb_000067_030 Hb_000067_030 Hb_003142_090--Hb_000067_030 Hb_003371_140 Hb_003371_140 Hb_003142_090--Hb_003371_140 Hb_006501_170 Hb_006501_170 Hb_003142_090--Hb_006501_170 Hb_061350_010 Hb_061350_010 Hb_003142_090--Hb_061350_010 Hb_002518_270 Hb_002518_270 Hb_003142_090--Hb_002518_270 Hb_000126_040 Hb_000126_040 Hb_003142_090--Hb_000126_040 Hb_003106_210 Hb_003106_210 Hb_000067_030--Hb_003106_210 Hb_001365_050 Hb_001365_050 Hb_000067_030--Hb_001365_050 Hb_000067_030--Hb_006501_170 Hb_006718_040 Hb_006718_040 Hb_000067_030--Hb_006718_040 Hb_001140_320 Hb_001140_320 Hb_000067_030--Hb_001140_320 Hb_001863_450 Hb_001863_450 Hb_003371_140--Hb_001863_450 Hb_126103_010 Hb_126103_010 Hb_003371_140--Hb_126103_010 Hb_003371_140--Hb_006501_170 Hb_000589_220 Hb_000589_220 Hb_003371_140--Hb_000589_220 Hb_004466_070 Hb_004466_070 Hb_003371_140--Hb_004466_070 Hb_006501_170--Hb_002518_270 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_008948_080 Hb_008948_080 Hb_006501_170--Hb_008948_080 Hb_011214_140 Hb_011214_140 Hb_006501_170--Hb_011214_140 Hb_027556_040 Hb_027556_040 Hb_061350_010--Hb_027556_040 Hb_001754_200 Hb_001754_200 Hb_061350_010--Hb_001754_200 Hb_004767_060 Hb_004767_060 Hb_061350_010--Hb_004767_060 Hb_002329_030 Hb_002329_030 Hb_061350_010--Hb_002329_030 Hb_000819_010 Hb_000819_010 Hb_061350_010--Hb_000819_010 Hb_006970_150 Hb_006970_150 Hb_002518_270--Hb_006970_150 Hb_003337_050 Hb_003337_050 Hb_002518_270--Hb_003337_050 Hb_033045_010 Hb_033045_010 Hb_002518_270--Hb_033045_010 Hb_002518_270--Hb_008948_080 Hb_001946_060 Hb_001946_060 Hb_002518_270--Hb_001946_060 Hb_001230_020 Hb_001230_020 Hb_000126_040--Hb_001230_020 Hb_000126_040--Hb_001863_450 Hb_004166_010 Hb_004166_010 Hb_000126_040--Hb_004166_010 Hb_000815_150 Hb_000815_150 Hb_000126_040--Hb_000815_150 Hb_001195_730 Hb_001195_730 Hb_000126_040--Hb_001195_730 Hb_000221_060 Hb_000221_060 Hb_000126_040--Hb_000221_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0517548 1.86538 0.285258 0.253647 0.0182302 0.0372398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.231085 0.0475699 0.741922 0.477714

CAGE analysis