Hb_001140_320

Information

Type -
Description -
Location Contig1140: 285497-288057
Sequence    

Annotation

kegg
ID rcu:RCOM_1495910
description AMP dependent CoA ligase, putative (EC:6.2.1.26)
nr
ID XP_012090254.1
description PREDICTED: oxalate--CoA ligase [Jatropha curcas]
swissprot
ID Q9SMT7
description Oxalate--CoA ligase OS=Arabidopsis thaliana GN=AAE3 PE=1 SV=1
trembl
ID A0A067JRX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26105 PE=4 SV=1
Gene Ontology
ID GO:0003824
description oxalate-- ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_320 0.0 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
2 Hb_000575_090 0.1339945654 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
3 Hb_000836_560 0.144160211 - - -
4 Hb_000067_030 0.1596513643 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
5 Hb_001374_040 0.1675169081 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
6 Hb_007919_030 0.16910028 - - -
7 Hb_001365_050 0.1705057461 - - hypothetical protein POPTR_0019s128601g, partial [Populus trichocarpa]
8 Hb_006316_030 0.1709295847 - - aldehyde oxidase, putative [Ricinus communis]
9 Hb_033045_010 0.1788548114 - - copine, putative [Ricinus communis]
10 Hb_002518_270 0.1797161214 - - glycogen phosphorylase, putative [Ricinus communis]
11 Hb_001946_060 0.1813470683 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
12 Hb_003106_210 0.1843815545 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
13 Hb_001388_020 0.188109847 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
14 Hb_107543_010 0.1888425044 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
15 Hb_001006_280 0.1888604266 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
16 Hb_003337_050 0.1931462499 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
17 Hb_002740_170 0.1936189852 - - PREDICTED: uncharacterized protein LOC105647357 [Jatropha curcas]
18 Hb_003142_090 0.193807399 - - Kinase, putative isoform 2 [Theobroma cacao]
19 Hb_029576_100 0.1942684584 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
20 Hb_000163_250 0.1950114544 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001140_320 Hb_001140_320 Hb_000575_090 Hb_000575_090 Hb_001140_320--Hb_000575_090 Hb_000836_560 Hb_000836_560 Hb_001140_320--Hb_000836_560 Hb_000067_030 Hb_000067_030 Hb_001140_320--Hb_000067_030 Hb_001374_040 Hb_001374_040 Hb_001140_320--Hb_001374_040 Hb_007919_030 Hb_007919_030 Hb_001140_320--Hb_007919_030 Hb_001365_050 Hb_001365_050 Hb_001140_320--Hb_001365_050 Hb_000575_090--Hb_001374_040 Hb_018212_010 Hb_018212_010 Hb_000575_090--Hb_018212_010 Hb_000501_040 Hb_000501_040 Hb_000575_090--Hb_000501_040 Hb_007420_010 Hb_007420_010 Hb_000575_090--Hb_007420_010 Hb_031862_020 Hb_031862_020 Hb_000575_090--Hb_031862_020 Hb_000265_020 Hb_000265_020 Hb_000836_560--Hb_000265_020 Hb_033045_010 Hb_033045_010 Hb_000836_560--Hb_033045_010 Hb_006970_150 Hb_006970_150 Hb_000836_560--Hb_006970_150 Hb_000836_560--Hb_001374_040 Hb_002518_270 Hb_002518_270 Hb_000836_560--Hb_002518_270 Hb_003106_210 Hb_003106_210 Hb_000067_030--Hb_003106_210 Hb_003142_090 Hb_003142_090 Hb_000067_030--Hb_003142_090 Hb_000067_030--Hb_001365_050 Hb_006501_170 Hb_006501_170 Hb_000067_030--Hb_006501_170 Hb_006718_040 Hb_006718_040 Hb_000067_030--Hb_006718_040 Hb_001374_040--Hb_006970_150 Hb_001374_040--Hb_031862_020 Hb_000237_070 Hb_000237_070 Hb_001374_040--Hb_000237_070 Hb_000417_120 Hb_000417_120 Hb_001374_040--Hb_000417_120 Hb_000163_250 Hb_000163_250 Hb_007919_030--Hb_000163_250 Hb_001675_130 Hb_001675_130 Hb_007919_030--Hb_001675_130 Hb_001085_230 Hb_001085_230 Hb_007919_030--Hb_001085_230 Hb_001946_060 Hb_001946_060 Hb_007919_030--Hb_001946_060 Hb_002217_200 Hb_002217_200 Hb_007919_030--Hb_002217_200 Hb_001819_010 Hb_001819_010 Hb_007919_030--Hb_001819_010 Hb_001365_050--Hb_003106_210 Hb_006316_030 Hb_006316_030 Hb_001365_050--Hb_006316_030 Hb_043768_010 Hb_043768_010 Hb_001365_050--Hb_043768_010 Hb_001365_050--Hb_007919_030 Hb_000377_160 Hb_000377_160 Hb_001365_050--Hb_000377_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.04313 0.405085 0.125625 0 0.0240048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.122655 0 0.793123 0.461909

CAGE analysis