Hb_001374_040

Information

Type -
Description -
Location Contig1374: 93695-97753
Sequence    

Annotation

kegg
ID vvi:100248326
description calcium-transporting ATPase 4, endoplasmic reticulum-type-like
nr
ID XP_012468366.1
description PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
swissprot
ID Q9XES1
description Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2
trembl
ID A0A0D2NSR5
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G252900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase endoplasmic reticulum-type-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10323: 96776-96952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001374_040 0.0 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
2 Hb_000575_090 0.1070563161 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
3 Hb_006970_150 0.1412601476 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
4 Hb_031862_020 0.1599935481 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
5 Hb_000836_560 0.1636410826 - - -
6 Hb_000237_070 0.1642083164 - - Purple acid phosphatase precursor, putative [Ricinus communis]
7 Hb_000417_120 0.1650043238 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
8 Hb_167272_010 0.1674493442 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
9 Hb_001140_320 0.1675169081 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
10 Hb_000252_080 0.1689240605 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
11 Hb_033045_010 0.1714807295 - - copine, putative [Ricinus communis]
12 Hb_001377_130 0.1719381457 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
13 Hb_004459_110 0.1737040026 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
14 Hb_003914_050 0.1746895902 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
15 Hb_001538_050 0.1767101195 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
16 Hb_007254_050 0.1802110922 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
17 Hb_003680_250 0.1817747196 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_075449_040 0.1819669515 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
19 Hb_004007_120 0.1823318616 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
20 Hb_012098_180 0.1830689098 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]

Gene co-expression network

sample Hb_001374_040 Hb_001374_040 Hb_000575_090 Hb_000575_090 Hb_001374_040--Hb_000575_090 Hb_006970_150 Hb_006970_150 Hb_001374_040--Hb_006970_150 Hb_031862_020 Hb_031862_020 Hb_001374_040--Hb_031862_020 Hb_000836_560 Hb_000836_560 Hb_001374_040--Hb_000836_560 Hb_000237_070 Hb_000237_070 Hb_001374_040--Hb_000237_070 Hb_000417_120 Hb_000417_120 Hb_001374_040--Hb_000417_120 Hb_001140_320 Hb_001140_320 Hb_000575_090--Hb_001140_320 Hb_018212_010 Hb_018212_010 Hb_000575_090--Hb_018212_010 Hb_000501_040 Hb_000501_040 Hb_000575_090--Hb_000501_040 Hb_007420_010 Hb_007420_010 Hb_000575_090--Hb_007420_010 Hb_000575_090--Hb_031862_020 Hb_033045_010 Hb_033045_010 Hb_006970_150--Hb_033045_010 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_000265_020 Hb_000265_020 Hb_006970_150--Hb_000265_020 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080 Hb_167272_010 Hb_167272_010 Hb_031862_020--Hb_167272_010 Hb_031862_020--Hb_000237_070 Hb_031862_020--Hb_000501_040 Hb_000085_220 Hb_000085_220 Hb_031862_020--Hb_000085_220 Hb_000382_030 Hb_000382_030 Hb_031862_020--Hb_000382_030 Hb_031862_020--Hb_007420_010 Hb_000836_560--Hb_000265_020 Hb_000836_560--Hb_001140_320 Hb_000836_560--Hb_033045_010 Hb_000836_560--Hb_006970_150 Hb_000836_560--Hb_002518_270 Hb_000237_070--Hb_000382_030 Hb_000237_070--Hb_167272_010 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000318_050 Hb_000318_050 Hb_000237_070--Hb_000318_050 Hb_001377_130 Hb_001377_130 Hb_000237_070--Hb_001377_130 Hb_000771_030 Hb_000771_030 Hb_000417_120--Hb_000771_030 Hb_000598_020 Hb_000598_020 Hb_000417_120--Hb_000598_020 Hb_065230_010 Hb_065230_010 Hb_000417_120--Hb_065230_010 Hb_000417_120--Hb_000382_030 Hb_000417_120--Hb_000237_070 Hb_000417_120--Hb_000075_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.107784 0.0484338 0.025897 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0106169 0 0.0505117 0.0226795

CAGE analysis