Hb_000575_090

Information

Type -
Description -
Location Contig575: 109823-110502
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05240g
description ubiquitin-conjugating enzyme family protein
nr
ID XP_011043382.1
description PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
swissprot
ID Q8VY10
description Probable ubiquitin-conjugating enzyme E2 24 OS=Arabidopsis thaliana GN=UBC24 PE=2 SV=1
trembl
ID U5FV88
description Ubiquitin-conjugating enzyme family protein OS=Populus trichocarpa GN=POPTR_0011s05240g PE=4 SV=1
Gene Ontology
ID GO:0044699
description probable ubiquitin-conjugating enzyme e2 24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 006_L16r.ab1: 108223-113243

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000575_090 0.0 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Populus euphratica]
2 Hb_001374_040 0.1070563161 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
3 Hb_001140_320 0.1339945654 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
4 Hb_018212_010 0.1491769148 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_000501_040 0.1520137657 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_007420_010 0.1562495869 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
7 Hb_031862_020 0.1601998142 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
8 Hb_167272_010 0.1608124746 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
9 Hb_006316_030 0.1708993444 - - aldehyde oxidase, putative [Ricinus communis]
10 Hb_001556_020 0.1716045308 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
11 Hb_114310_050 0.1720649092 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
12 Hb_021443_050 0.1735866321 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010417_100 0.1741062272 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
14 Hb_023344_130 0.1741811431 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
15 Hb_029576_100 0.1746718187 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
16 Hb_001956_080 0.1751131291 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
17 Hb_001538_050 0.1759319699 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
18 Hb_000261_420 0.1766924564 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
19 Hb_007420_020 0.1789697605 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_007894_030 0.1790898887 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000575_090 Hb_000575_090 Hb_001374_040 Hb_001374_040 Hb_000575_090--Hb_001374_040 Hb_001140_320 Hb_001140_320 Hb_000575_090--Hb_001140_320 Hb_018212_010 Hb_018212_010 Hb_000575_090--Hb_018212_010 Hb_000501_040 Hb_000501_040 Hb_000575_090--Hb_000501_040 Hb_007420_010 Hb_007420_010 Hb_000575_090--Hb_007420_010 Hb_031862_020 Hb_031862_020 Hb_000575_090--Hb_031862_020 Hb_006970_150 Hb_006970_150 Hb_001374_040--Hb_006970_150 Hb_001374_040--Hb_031862_020 Hb_000836_560 Hb_000836_560 Hb_001374_040--Hb_000836_560 Hb_000237_070 Hb_000237_070 Hb_001374_040--Hb_000237_070 Hb_000417_120 Hb_000417_120 Hb_001374_040--Hb_000417_120 Hb_001140_320--Hb_000836_560 Hb_000067_030 Hb_000067_030 Hb_001140_320--Hb_000067_030 Hb_001140_320--Hb_001374_040 Hb_007919_030 Hb_007919_030 Hb_001140_320--Hb_007919_030 Hb_001365_050 Hb_001365_050 Hb_001140_320--Hb_001365_050 Hb_002361_010 Hb_002361_010 Hb_018212_010--Hb_002361_010 Hb_007483_080 Hb_007483_080 Hb_018212_010--Hb_007483_080 Hb_002010_100 Hb_002010_100 Hb_018212_010--Hb_002010_100 Hb_005016_080 Hb_005016_080 Hb_018212_010--Hb_005016_080 Hb_001956_080 Hb_001956_080 Hb_018212_010--Hb_001956_080 Hb_001722_070 Hb_001722_070 Hb_018212_010--Hb_001722_070 Hb_000501_040--Hb_007420_010 Hb_000501_040--Hb_031862_020 Hb_167272_010 Hb_167272_010 Hb_000501_040--Hb_167272_010 Hb_029576_100 Hb_029576_100 Hb_000501_040--Hb_029576_100 Hb_127661_010 Hb_127661_010 Hb_000501_040--Hb_127661_010 Hb_023344_130 Hb_023344_130 Hb_000501_040--Hb_023344_130 Hb_007420_010--Hb_167272_010 Hb_114310_050 Hb_114310_050 Hb_007420_010--Hb_114310_050 Hb_007420_020 Hb_007420_020 Hb_007420_010--Hb_007420_020 Hb_009803_030 Hb_009803_030 Hb_007420_010--Hb_009803_030 Hb_001515_030 Hb_001515_030 Hb_007420_010--Hb_001515_030 Hb_031862_020--Hb_167272_010 Hb_031862_020--Hb_000237_070 Hb_000085_220 Hb_000085_220 Hb_031862_020--Hb_000085_220 Hb_000382_030 Hb_000382_030 Hb_031862_020--Hb_000382_030 Hb_031862_020--Hb_007420_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.90241 0.463342 0.276864 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.119098 0 0.54875 0.437658

CAGE analysis