Hb_009803_030

Information

Type -
Description -
Location Contig9803: 16628-19398
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07360g
description POPTRDRAFT_762246; hypothetical protein
nr
ID XP_012085845.1
description PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID B9HAX9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s07360g PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64386: 17196-17544 , PASA_asmbl_64387: 18660-18811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009803_030 0.0 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
2 Hb_007420_010 0.0800237157 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
3 Hb_167272_010 0.0851997021 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
4 Hb_000819_010 0.0858279259 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
5 Hb_001515_030 0.087982067 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000280_110 0.0896689787 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_046101_010 0.0928277927 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
8 Hb_000037_010 0.099662131 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
9 Hb_114310_050 0.1039140825 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
10 Hb_001369_070 0.1088968942 - - unnamed protein product [Vitis vinifera]
11 Hb_000668_160 0.1109064244 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
12 Hb_000563_120 0.1116380485 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
13 Hb_002600_010 0.114006918 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
14 Hb_107543_010 0.118337866 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
15 Hb_010921_060 0.1225244611 - - ATP binding protein, putative [Ricinus communis]
16 Hb_011344_140 0.1227632337 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
17 Hb_031862_020 0.1241591192 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
18 Hb_007894_030 0.1242379022 - - calcium-dependent protein kinase, putative [Ricinus communis]
19 Hb_004306_140 0.1249960009 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_007420_020 0.1256702254 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]

Gene co-expression network

sample Hb_009803_030 Hb_009803_030 Hb_007420_010 Hb_007420_010 Hb_009803_030--Hb_007420_010 Hb_167272_010 Hb_167272_010 Hb_009803_030--Hb_167272_010 Hb_000819_010 Hb_000819_010 Hb_009803_030--Hb_000819_010 Hb_001515_030 Hb_001515_030 Hb_009803_030--Hb_001515_030 Hb_000280_110 Hb_000280_110 Hb_009803_030--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_009803_030--Hb_046101_010 Hb_007420_010--Hb_167272_010 Hb_000501_040 Hb_000501_040 Hb_007420_010--Hb_000501_040 Hb_114310_050 Hb_114310_050 Hb_007420_010--Hb_114310_050 Hb_007420_020 Hb_007420_020 Hb_007420_010--Hb_007420_020 Hb_007420_010--Hb_001515_030 Hb_167272_010--Hb_001515_030 Hb_031862_020 Hb_031862_020 Hb_167272_010--Hb_031862_020 Hb_000237_070 Hb_000237_070 Hb_167272_010--Hb_000237_070 Hb_000085_220 Hb_000085_220 Hb_167272_010--Hb_000085_220 Hb_000668_160 Hb_000668_160 Hb_000819_010--Hb_000668_160 Hb_000819_010--Hb_000280_110 Hb_010921_060 Hb_010921_060 Hb_000819_010--Hb_010921_060 Hb_008040_060 Hb_008040_060 Hb_000819_010--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000819_010--Hb_000522_130 Hb_005569_030 Hb_005569_030 Hb_001515_030--Hb_005569_030 Hb_001515_030--Hb_114310_050 Hb_001515_030--Hb_008040_060 Hb_002276_100 Hb_002276_100 Hb_000280_110--Hb_002276_100 Hb_002600_010 Hb_002600_010 Hb_000280_110--Hb_002600_010 Hb_000280_110--Hb_046101_010 Hb_107543_010 Hb_107543_010 Hb_000280_110--Hb_107543_010 Hb_020285_010 Hb_020285_010 Hb_046101_010--Hb_020285_010 Hb_001369_070 Hb_001369_070 Hb_046101_010--Hb_001369_070 Hb_074312_020 Hb_074312_020 Hb_046101_010--Hb_074312_020 Hb_046101_010--Hb_002276_100 Hb_001894_040 Hb_001894_040 Hb_046101_010--Hb_001894_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00747782 3.69553 1.0603 1.01483 0.0149713 0.00700953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0254739 1.77579 1.27825

CAGE analysis