Hb_000280_110

Information

Type -
Description -
Location Contig280: 163996-175166
Sequence    

Annotation

kegg
ID rcu:RCOM_1299070
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002519381.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID Q9LT96
description Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1
trembl
ID B9S062
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_1299070 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable leucine-rich repeat receptor-like protein kinase at5g49770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29251: 164023-167251 , PASA_asmbl_29252: 167320-167438 , PASA_asmbl_29253: 167525-171863 , PASA_asmbl_29254: 172000-173773 , PASA_asmbl_29255: 173095-174005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000280_110 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_002276_100 0.0864207924 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
3 Hb_000819_010 0.0873530779 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
4 Hb_009803_030 0.0896689787 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
5 Hb_002600_010 0.0914662855 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
6 Hb_046101_010 0.0917673767 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
7 Hb_107543_010 0.0927584655 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
8 Hb_000668_160 0.0935406936 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
9 Hb_009581_040 0.104555015 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
10 Hb_003556_070 0.1064928914 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_084127_010 0.1074644988 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_074312_020 0.1093648915 - - cytochrome P450, putative [Ricinus communis]
13 Hb_001369_070 0.1098414905 - - unnamed protein product [Vitis vinifera]
14 Hb_000120_070 0.11440148 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
15 Hb_001894_040 0.1145265583 - - PREDICTED: carbonic anhydrase 2 isoform X1 [Jatropha curcas]
16 Hb_017604_020 0.1153806151 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
17 Hb_020285_010 0.1190571277 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
18 Hb_020648_020 0.1203474992 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
19 Hb_073119_010 0.122472443 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
20 Hb_007894_030 0.1246837957 - - calcium-dependent protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000280_110 Hb_000280_110 Hb_002276_100 Hb_002276_100 Hb_000280_110--Hb_002276_100 Hb_000819_010 Hb_000819_010 Hb_000280_110--Hb_000819_010 Hb_009803_030 Hb_009803_030 Hb_000280_110--Hb_009803_030 Hb_002600_010 Hb_002600_010 Hb_000280_110--Hb_002600_010 Hb_046101_010 Hb_046101_010 Hb_000280_110--Hb_046101_010 Hb_107543_010 Hb_107543_010 Hb_000280_110--Hb_107543_010 Hb_074312_020 Hb_074312_020 Hb_002276_100--Hb_074312_020 Hb_020285_010 Hb_020285_010 Hb_002276_100--Hb_020285_010 Hb_002276_100--Hb_046101_010 Hb_038777_010 Hb_038777_010 Hb_002276_100--Hb_038777_010 Hb_001369_070 Hb_001369_070 Hb_002276_100--Hb_001369_070 Hb_000668_160 Hb_000668_160 Hb_000819_010--Hb_000668_160 Hb_000819_010--Hb_009803_030 Hb_010921_060 Hb_010921_060 Hb_000819_010--Hb_010921_060 Hb_008040_060 Hb_008040_060 Hb_000819_010--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000819_010--Hb_000522_130 Hb_007420_010 Hb_007420_010 Hb_009803_030--Hb_007420_010 Hb_167272_010 Hb_167272_010 Hb_009803_030--Hb_167272_010 Hb_001515_030 Hb_001515_030 Hb_009803_030--Hb_001515_030 Hb_009803_030--Hb_046101_010 Hb_004306_140 Hb_004306_140 Hb_002600_010--Hb_004306_140 Hb_002600_010--Hb_002276_100 Hb_002600_010--Hb_009803_030 Hb_007894_030 Hb_007894_030 Hb_002600_010--Hb_007894_030 Hb_000563_120 Hb_000563_120 Hb_002600_010--Hb_000563_120 Hb_046101_010--Hb_020285_010 Hb_046101_010--Hb_001369_070 Hb_046101_010--Hb_074312_020 Hb_001894_040 Hb_001894_040 Hb_046101_010--Hb_001894_040 Hb_107543_010--Hb_046101_010 Hb_107543_010--Hb_001894_040 Hb_107543_010--Hb_009803_030 Hb_000489_020 Hb_000489_020 Hb_107543_010--Hb_000489_020 Hb_107543_010--Hb_074312_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118276 24.4714 5.44428 7.07293 0.0444691 0.307239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0520499 0.0102401 0.274684 12.9407 5.36232

CAGE analysis