Hb_000819_010

Information

Type -
Description -
Location Contig819: 26065-39308
Sequence    

Annotation

kegg
ID tcc:TCM_001386
description Receptor-like protein kinase 1, putative
nr
ID XP_007048277.1
description Receptor-like protein kinase 1, putative [Theobroma cacao]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID A0A061DIK5
description Serine/threonine-protein kinase OS=Theobroma cacao GN=TCM_001386 PE=3 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59526: 26619-26967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000819_010 0.0 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
2 Hb_000668_160 0.0826219274 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
3 Hb_009803_030 0.0858279259 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
4 Hb_000280_110 0.0873530779 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
5 Hb_010921_060 0.0922857343 - - ATP binding protein, putative [Ricinus communis]
6 Hb_008040_060 0.1027511541 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
7 Hb_000522_130 0.1080704941 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
8 Hb_073119_010 0.1088331525 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
9 Hb_000521_290 0.113140013 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
10 Hb_017604_020 0.1150117134 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
11 Hb_000705_130 0.1151784753 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002239_020 0.1165865076 - - MLO, putative [Theobroma cacao]
13 Hb_000094_010 0.1226729113 - - lrr receptor protein kinase, putative [Ricinus communis]
14 Hb_001515_030 0.1233033459 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_020648_020 0.1244970781 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
16 Hb_107543_010 0.1258029828 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
17 Hb_084127_010 0.1288534549 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_000098_250 0.1289916496 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
19 Hb_007237_090 0.1292657561 - - conserved hypothetical protein [Ricinus communis]
20 Hb_046101_010 0.1307470759 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]

Gene co-expression network

sample Hb_000819_010 Hb_000819_010 Hb_000668_160 Hb_000668_160 Hb_000819_010--Hb_000668_160 Hb_009803_030 Hb_009803_030 Hb_000819_010--Hb_009803_030 Hb_000280_110 Hb_000280_110 Hb_000819_010--Hb_000280_110 Hb_010921_060 Hb_010921_060 Hb_000819_010--Hb_010921_060 Hb_008040_060 Hb_008040_060 Hb_000819_010--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000819_010--Hb_000522_130 Hb_000668_160--Hb_000280_110 Hb_000668_160--Hb_010921_060 Hb_000668_160--Hb_009803_030 Hb_002600_010 Hb_002600_010 Hb_000668_160--Hb_002600_010 Hb_107543_010 Hb_107543_010 Hb_000668_160--Hb_107543_010 Hb_007420_010 Hb_007420_010 Hb_009803_030--Hb_007420_010 Hb_167272_010 Hb_167272_010 Hb_009803_030--Hb_167272_010 Hb_001515_030 Hb_001515_030 Hb_009803_030--Hb_001515_030 Hb_009803_030--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_009803_030--Hb_046101_010 Hb_002276_100 Hb_002276_100 Hb_000280_110--Hb_002276_100 Hb_000280_110--Hb_002600_010 Hb_000280_110--Hb_046101_010 Hb_000280_110--Hb_107543_010 Hb_002239_020 Hb_002239_020 Hb_010921_060--Hb_002239_020 Hb_000465_380 Hb_000465_380 Hb_010921_060--Hb_000465_380 Hb_011344_140 Hb_011344_140 Hb_010921_060--Hb_011344_140 Hb_000521_290 Hb_000521_290 Hb_010921_060--Hb_000521_290 Hb_002529_080 Hb_002529_080 Hb_008040_060--Hb_002529_080 Hb_001248_170 Hb_001248_170 Hb_008040_060--Hb_001248_170 Hb_003914_050 Hb_003914_050 Hb_008040_060--Hb_003914_050 Hb_000027_060 Hb_000027_060 Hb_008040_060--Hb_000027_060 Hb_000000_070 Hb_000000_070 Hb_008040_060--Hb_000000_070 Hb_008667_030 Hb_008667_030 Hb_008040_060--Hb_008667_030 Hb_033312_090 Hb_033312_090 Hb_000522_130--Hb_033312_090 Hb_012098_180 Hb_012098_180 Hb_000522_130--Hb_012098_180 Hb_001538_050 Hb_001538_050 Hb_000522_130--Hb_001538_050 Hb_000522_130--Hb_003914_050 Hb_000522_130--Hb_008040_060 Hb_000705_130 Hb_000705_130 Hb_000522_130--Hb_000705_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0170017 4.65659 0.990656 1.02004 0.0318118 0.0594948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00605691 0.0116728 1.62218 1.08136

CAGE analysis