Hb_001538_050

Information

Type -
Description -
Location Contig1538: 92267-100691
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05700g
description POPTRDRAFT_754346; hypothetical protein
nr
ID XP_011026208.1
description PREDICTED: TMV resistance protein N-like [Populus euphratica]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9GT01
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05700g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13229: 92318-100355 , PASA_asmbl_13230: 100866-102340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_050 0.0 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
2 Hb_012098_180 0.0906766585 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
3 Hb_000522_130 0.10136933 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
4 Hb_000237_070 0.1021898822 - - Purple acid phosphatase precursor, putative [Ricinus communis]
5 Hb_001123_170 0.1114131296 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001377_130 0.1122008111 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
7 Hb_000382_030 0.1139652664 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
8 Hb_167272_010 0.1145272362 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
9 Hb_001515_030 0.1160162689 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_033312_090 0.1170452021 - - PREDICTED: HMG-Y-related protein A-like isoform X1 [Jatropha curcas]
11 Hb_031862_020 0.1209767735 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_002343_020 0.1213339851 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
13 Hb_002783_140 0.1215634295 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
14 Hb_000369_070 0.122814735 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_006483_090 0.1233497924 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
16 Hb_000402_030 0.1256554321 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
17 Hb_000318_050 0.1259170008 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
18 Hb_009803_030 0.1261123228 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
19 Hb_005569_030 0.1276067272 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 isoform X1 [Jatropha curcas]
20 Hb_002890_320 0.1300428807 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]

Gene co-expression network

sample Hb_001538_050 Hb_001538_050 Hb_012098_180 Hb_012098_180 Hb_001538_050--Hb_012098_180 Hb_000522_130 Hb_000522_130 Hb_001538_050--Hb_000522_130 Hb_000237_070 Hb_000237_070 Hb_001538_050--Hb_000237_070 Hb_001123_170 Hb_001123_170 Hb_001538_050--Hb_001123_170 Hb_001377_130 Hb_001377_130 Hb_001538_050--Hb_001377_130 Hb_000382_030 Hb_000382_030 Hb_001538_050--Hb_000382_030 Hb_012098_180--Hb_000237_070 Hb_012098_180--Hb_000522_130 Hb_003914_050 Hb_003914_050 Hb_012098_180--Hb_003914_050 Hb_002890_320 Hb_002890_320 Hb_012098_180--Hb_002890_320 Hb_012098_180--Hb_001123_170 Hb_033312_090 Hb_033312_090 Hb_000522_130--Hb_033312_090 Hb_000522_130--Hb_003914_050 Hb_008040_060 Hb_008040_060 Hb_000522_130--Hb_008040_060 Hb_000705_130 Hb_000705_130 Hb_000522_130--Hb_000705_130 Hb_031862_020 Hb_031862_020 Hb_000237_070--Hb_031862_020 Hb_000237_070--Hb_000382_030 Hb_167272_010 Hb_167272_010 Hb_000237_070--Hb_167272_010 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000318_050 Hb_000318_050 Hb_000237_070--Hb_000318_050 Hb_000237_070--Hb_001377_130 Hb_003656_170 Hb_003656_170 Hb_001123_170--Hb_003656_170 Hb_001123_170--Hb_001377_130 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_002078_250 Hb_002078_250 Hb_001123_170--Hb_002078_250 Hb_001377_130--Hb_000382_030 Hb_001377_130--Hb_000318_050 Hb_005628_050 Hb_005628_050 Hb_001377_130--Hb_005628_050 Hb_000382_030--Hb_000318_050 Hb_000085_220 Hb_000085_220 Hb_000382_030--Hb_000085_220 Hb_000382_030--Hb_031862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.30405 28.8207 15.035 8.70898 0.342954 0.443564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.285546 0.154476 0.0535331 11.8511 10.5052

CAGE analysis