Hb_000477_110

Information

Type transcription factor
Description TF Family: GRAS
Location Contig477: 174483-176099
Sequence    

Annotation

kegg
ID rcu:RCOM_0826140
description DELLA protein GAI1, putative
nr
ID XP_012078699.1
description PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
swissprot
ID Q9LQT8
description DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1
trembl
ID A0A067K7Y4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13266 PE=4 SV=1
Gene Ontology
ID GO:0005634
description della protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000477_110 0.0 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
2 Hb_006483_090 0.0758489064 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
3 Hb_000472_020 0.0843398309 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
4 Hb_006269_010 0.0881195711 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
5 Hb_001956_080 0.0899528247 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
6 Hb_001153_090 0.0928130845 - - PREDICTED: protein FAM63A [Jatropha curcas]
7 Hb_000613_250 0.0931844973 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
8 Hb_004306_140 0.1024944814 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_001123_170 0.103213504 - - conserved hypothetical protein [Ricinus communis]
10 Hb_014361_020 0.1033458785 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
11 Hb_001544_070 0.1033686866 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
12 Hb_023344_130 0.1053102044 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
13 Hb_000092_030 0.1054602855 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
14 Hb_004166_020 0.1091199418 - - -
15 Hb_004421_010 0.110152218 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_002849_180 0.1108328871 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
17 Hb_001174_030 0.1117733102 - - unnamed protein product [Vitis vinifera]
18 Hb_007747_100 0.1140397249 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
19 Hb_174101_010 0.1142322022 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
20 Hb_000007_440 0.1150413066 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000477_110 Hb_000477_110 Hb_006483_090 Hb_006483_090 Hb_000477_110--Hb_006483_090 Hb_000472_020 Hb_000472_020 Hb_000477_110--Hb_000472_020 Hb_006269_010 Hb_006269_010 Hb_000477_110--Hb_006269_010 Hb_001956_080 Hb_001956_080 Hb_000477_110--Hb_001956_080 Hb_001153_090 Hb_001153_090 Hb_000477_110--Hb_001153_090 Hb_000613_250 Hb_000613_250 Hb_000477_110--Hb_000613_250 Hb_002849_180 Hb_002849_180 Hb_006483_090--Hb_002849_180 Hb_006483_090--Hb_006269_010 Hb_006483_090--Hb_001153_090 Hb_000007_440 Hb_000007_440 Hb_006483_090--Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_006483_090--Hb_007483_080 Hb_001544_070 Hb_001544_070 Hb_000472_020--Hb_001544_070 Hb_000472_020--Hb_000613_250 Hb_001174_030 Hb_001174_030 Hb_000472_020--Hb_001174_030 Hb_144703_010 Hb_144703_010 Hb_000472_020--Hb_144703_010 Hb_174101_010 Hb_174101_010 Hb_000472_020--Hb_174101_010 Hb_000342_020 Hb_000342_020 Hb_000472_020--Hb_000342_020 Hb_006269_010--Hb_001153_090 Hb_006269_010--Hb_001174_030 Hb_000085_220 Hb_000085_220 Hb_006269_010--Hb_000085_220 Hb_014361_020 Hb_014361_020 Hb_006269_010--Hb_014361_020 Hb_004166_020 Hb_004166_020 Hb_006269_010--Hb_004166_020 Hb_005488_030 Hb_005488_030 Hb_001956_080--Hb_005488_030 Hb_001956_080--Hb_001153_090 Hb_004421_010 Hb_004421_010 Hb_001956_080--Hb_004421_010 Hb_023344_130 Hb_023344_130 Hb_001956_080--Hb_023344_130 Hb_007747_100 Hb_007747_100 Hb_001956_080--Hb_007747_100 Hb_002849_120 Hb_002849_120 Hb_001153_090--Hb_002849_120 Hb_001153_090--Hb_007747_100 Hb_001153_090--Hb_023344_130 Hb_001160_020 Hb_001160_020 Hb_001153_090--Hb_001160_020 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140 Hb_000613_250--Hb_000342_020 Hb_000613_250--Hb_004421_010 Hb_001013_050 Hb_001013_050 Hb_000613_250--Hb_001013_050 Hb_000613_250--Hb_144703_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269669 22.937 16.4228 17.4899 0.180923 0.269036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229246 0.0225451 0.0849487 12.5954 14.2395

CAGE analysis