Hb_001544_070

Information

Type -
Description -
Location Contig1544: 109835-113028
Sequence    

Annotation

kegg
ID rcu:RCOM_1289060
description spore coat protein, putative (EC:1.3.3.5)
nr
ID XP_012072194.1
description PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
swissprot
ID F4I4K5
description Multicopper oxidase LPR1 OS=Arabidopsis thaliana GN=LPR1 PE=2 SV=1
trembl
ID A0A067KPG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04680 PE=4 SV=1
Gene Ontology
ID GO:0005507
description multicopper oxidase lpr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13343: 109841-110350 , PASA_asmbl_13344: 110514-112921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001544_070 0.0 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
2 Hb_174101_010 0.0639709949 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
3 Hb_001174_030 0.0647250874 - - unnamed protein product [Vitis vinifera]
4 Hb_004122_060 0.0752034075 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
5 Hb_000472_020 0.0758912279 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
6 Hb_000092_030 0.0887638152 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
7 Hb_001706_020 0.0916246412 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
8 Hb_019496_040 0.0926925323 - - kinase family protein [Populus trichocarpa]
9 Hb_059000_010 0.0928112691 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
10 Hb_006269_010 0.1000602708 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
11 Hb_001141_160 0.1006873527 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
12 Hb_000342_020 0.1007405629 - - bel1 homeotic protein, putative [Ricinus communis]
13 Hb_000946_050 0.1030482072 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000477_110 0.1033686866 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
15 Hb_030982_050 0.1040303576 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
16 Hb_004166_020 0.1051894239 - - -
17 Hb_001956_080 0.1054915046 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
18 Hb_000589_240 0.1064817848 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
19 Hb_144703_010 0.1087569961 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
20 Hb_000398_140 0.1098542656 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_001544_070 Hb_001544_070 Hb_174101_010 Hb_174101_010 Hb_001544_070--Hb_174101_010 Hb_001174_030 Hb_001174_030 Hb_001544_070--Hb_001174_030 Hb_004122_060 Hb_004122_060 Hb_001544_070--Hb_004122_060 Hb_000472_020 Hb_000472_020 Hb_001544_070--Hb_000472_020 Hb_000092_030 Hb_000092_030 Hb_001544_070--Hb_000092_030 Hb_001706_020 Hb_001706_020 Hb_001544_070--Hb_001706_020 Hb_004166_020 Hb_004166_020 Hb_174101_010--Hb_004166_020 Hb_174101_010--Hb_001174_030 Hb_008092_020 Hb_008092_020 Hb_174101_010--Hb_008092_020 Hb_174101_010--Hb_000472_020 Hb_005034_010 Hb_005034_010 Hb_174101_010--Hb_005034_010 Hb_001174_030--Hb_001706_020 Hb_001174_030--Hb_005034_010 Hb_001174_030--Hb_000472_020 Hb_003562_040 Hb_003562_040 Hb_001174_030--Hb_003562_040 Hb_059000_010 Hb_059000_010 Hb_004122_060--Hb_059000_010 Hb_009554_030 Hb_009554_030 Hb_004122_060--Hb_009554_030 Hb_000946_050 Hb_000946_050 Hb_004122_060--Hb_000946_050 Hb_001141_160 Hb_001141_160 Hb_004122_060--Hb_001141_160 Hb_004122_060--Hb_000092_030 Hb_000613_250 Hb_000613_250 Hb_000472_020--Hb_000613_250 Hb_144703_010 Hb_144703_010 Hb_000472_020--Hb_144703_010 Hb_000342_020 Hb_000342_020 Hb_000472_020--Hb_000342_020 Hb_000092_030--Hb_000946_050 Hb_000085_220 Hb_000085_220 Hb_000092_030--Hb_000085_220 Hb_000092_030--Hb_004166_020 Hb_006269_010 Hb_006269_010 Hb_000092_030--Hb_006269_010 Hb_000215_290 Hb_000215_290 Hb_001706_020--Hb_000215_290 Hb_005488_030 Hb_005488_030 Hb_001706_020--Hb_005488_030 Hb_143629_200 Hb_143629_200 Hb_001706_020--Hb_143629_200 Hb_001706_020--Hb_000472_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0118479 15.0809 10.9216 16.8134 0.0191384 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.9318 12.5777

CAGE analysis