Hb_000092_030

Information

Type -
Description -
Location Contig92: 51837-52439
Sequence    

Annotation

kegg
ID rcu:RCOM_0331920
description hypothetical protein
nr
ID XP_011004822.1
description PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9T855
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0331920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000092_030 0.0 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
2 Hb_000946_050 0.0451981033 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000085_220 0.0795099655 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004166_020 0.0860013081 - - -
5 Hb_001544_070 0.0887638152 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
6 Hb_004122_060 0.0919966953 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
7 Hb_006269_010 0.0972933271 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
8 Hb_000477_110 0.1054602855 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
9 Hb_030982_050 0.1056509163 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
10 Hb_000096_210 0.1057289745 - - PREDICTED: probable carboxylesterase 7 [Jatropha curcas]
11 Hb_059000_010 0.107531797 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
12 Hb_014361_020 0.1077259282 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
13 Hb_002450_180 0.1108124686 - - conserved hypothetical protein [Ricinus communis]
14 Hb_174101_010 0.1117467112 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
15 Hb_000382_030 0.1159640016 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
16 Hb_001141_160 0.1161844508 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
17 Hb_001956_080 0.1175019742 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
18 Hb_000411_050 0.1210978725 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
19 Hb_009554_030 0.1212265519 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
20 Hb_000163_180 0.1230038636 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000092_030 Hb_000092_030 Hb_000946_050 Hb_000946_050 Hb_000092_030--Hb_000946_050 Hb_000085_220 Hb_000085_220 Hb_000092_030--Hb_000085_220 Hb_004166_020 Hb_004166_020 Hb_000092_030--Hb_004166_020 Hb_001544_070 Hb_001544_070 Hb_000092_030--Hb_001544_070 Hb_004122_060 Hb_004122_060 Hb_000092_030--Hb_004122_060 Hb_006269_010 Hb_006269_010 Hb_000092_030--Hb_006269_010 Hb_000096_210 Hb_000096_210 Hb_000946_050--Hb_000096_210 Hb_000946_050--Hb_004122_060 Hb_059000_010 Hb_059000_010 Hb_000946_050--Hb_059000_010 Hb_002450_180 Hb_002450_180 Hb_000946_050--Hb_002450_180 Hb_001141_160 Hb_001141_160 Hb_000946_050--Hb_001141_160 Hb_000085_220--Hb_004166_020 Hb_014361_020 Hb_014361_020 Hb_000085_220--Hb_014361_020 Hb_167272_010 Hb_167272_010 Hb_000085_220--Hb_167272_010 Hb_031862_020 Hb_031862_020 Hb_000085_220--Hb_031862_020 Hb_000085_220--Hb_006269_010 Hb_004166_020--Hb_014361_020 Hb_174101_010 Hb_174101_010 Hb_004166_020--Hb_174101_010 Hb_004166_020--Hb_006269_010 Hb_000497_100 Hb_000497_100 Hb_004166_020--Hb_000497_100 Hb_001544_070--Hb_174101_010 Hb_001174_030 Hb_001174_030 Hb_001544_070--Hb_001174_030 Hb_001544_070--Hb_004122_060 Hb_000472_020 Hb_000472_020 Hb_001544_070--Hb_000472_020 Hb_001706_020 Hb_001706_020 Hb_001544_070--Hb_001706_020 Hb_004122_060--Hb_059000_010 Hb_009554_030 Hb_009554_030 Hb_004122_060--Hb_009554_030 Hb_004122_060--Hb_001141_160 Hb_001153_090 Hb_001153_090 Hb_006269_010--Hb_001153_090 Hb_006269_010--Hb_001174_030 Hb_000477_110 Hb_000477_110 Hb_006269_010--Hb_000477_110 Hb_006269_010--Hb_014361_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.31396 1.25986 1.21289 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.06573 0.762828

CAGE analysis