Hb_000472_020

Information

Type -
Description -
Location Contig472: 45789-50045
Sequence    

Annotation

kegg
ID rcu:RCOM_0721990
description hypothetical protein
nr
ID XP_012080963.1
description PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
swissprot
ID A7SGF0
description Protein MEF2BNB homolog OS=Nematostella vectensis GN=v1g233178 PE=3 SV=1
trembl
ID A0A067KF42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16158 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44311: 48791-49004
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000472_020 0.0 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
2 Hb_001544_070 0.0758912279 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
3 Hb_000613_250 0.0762467168 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
4 Hb_001174_030 0.0770914922 - - unnamed protein product [Vitis vinifera]
5 Hb_144703_010 0.0799386646 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
6 Hb_174101_010 0.080248143 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
7 Hb_000342_020 0.0803525614 - - bel1 homeotic protein, putative [Ricinus communis]
8 Hb_000477_110 0.0843398309 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
9 Hb_008092_020 0.0925614963 - - transcription factor, putative [Ricinus communis]
10 Hb_001013_050 0.0932367011 - - unnamed protein product [Coffea canephora]
11 Hb_001706_020 0.0937132089 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
12 Hb_019496_040 0.0987437151 - - kinase family protein [Populus trichocarpa]
13 Hb_003835_030 0.0998289282 - - glycosyltransferase, partial [Arabidopsis thaliana]
14 Hb_000215_290 0.1004579931 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
15 Hb_005034_010 0.1046795016 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_000589_240 0.1063296468 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
17 Hb_004421_010 0.1089835969 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_001956_080 0.1107880634 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
19 Hb_006269_010 0.1152875236 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
20 Hb_004306_140 0.1156379911 - - calcineurin-like phosphoesterase [Manihot esculenta]

Gene co-expression network

sample Hb_000472_020 Hb_000472_020 Hb_001544_070 Hb_001544_070 Hb_000472_020--Hb_001544_070 Hb_000613_250 Hb_000613_250 Hb_000472_020--Hb_000613_250 Hb_001174_030 Hb_001174_030 Hb_000472_020--Hb_001174_030 Hb_144703_010 Hb_144703_010 Hb_000472_020--Hb_144703_010 Hb_174101_010 Hb_174101_010 Hb_000472_020--Hb_174101_010 Hb_000342_020 Hb_000342_020 Hb_000472_020--Hb_000342_020 Hb_001544_070--Hb_174101_010 Hb_001544_070--Hb_001174_030 Hb_004122_060 Hb_004122_060 Hb_001544_070--Hb_004122_060 Hb_000092_030 Hb_000092_030 Hb_001544_070--Hb_000092_030 Hb_001706_020 Hb_001706_020 Hb_001544_070--Hb_001706_020 Hb_000613_250--Hb_000342_020 Hb_004421_010 Hb_004421_010 Hb_000613_250--Hb_004421_010 Hb_000477_110 Hb_000477_110 Hb_000613_250--Hb_000477_110 Hb_001013_050 Hb_001013_050 Hb_000613_250--Hb_001013_050 Hb_000613_250--Hb_144703_010 Hb_001174_030--Hb_001706_020 Hb_005034_010 Hb_005034_010 Hb_001174_030--Hb_005034_010 Hb_001174_030--Hb_174101_010 Hb_003562_040 Hb_003562_040 Hb_001174_030--Hb_003562_040 Hb_000069_540 Hb_000069_540 Hb_144703_010--Hb_000069_540 Hb_019496_040 Hb_019496_040 Hb_144703_010--Hb_019496_040 Hb_008598_010 Hb_008598_010 Hb_144703_010--Hb_008598_010 Hb_002902_040 Hb_002902_040 Hb_144703_010--Hb_002902_040 Hb_144703_010--Hb_000342_020 Hb_004166_020 Hb_004166_020 Hb_174101_010--Hb_004166_020 Hb_008092_020 Hb_008092_020 Hb_174101_010--Hb_008092_020 Hb_174101_010--Hb_005034_010 Hb_000342_020--Hb_002902_040 Hb_000342_020--Hb_019496_040 Hb_002151_020 Hb_002151_020 Hb_000342_020--Hb_002151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0629719 12.886 7.74022 13.5114 0.160815 0.0246716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0641861 0 0.0916084 7.05945 9.96567

CAGE analysis