Hb_000613_250

Information

Type -
Description -
Location Contig613: 204926-208902
Sequence    

Annotation

kegg
ID rcu:RCOM_0304730
description mutt domain protein, putative (EC:3.6.1.22)
nr
ID XP_012089548.1
description PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
swissprot
ID Q9SU14
description Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1
trembl
ID A0A067JT02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00545 PE=3 SV=1
Gene Ontology
ID GO:0000210
description nudix hydrolase 2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51093: 202100-209153 , PASA_asmbl_51094: 204918-209153
cDNA
(Sanger)
(ID:Location)		 040_L23.ab1: 202100-206867

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000613_250 0.0 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
2 Hb_000342_020 0.0745010884 - - bel1 homeotic protein, putative [Ricinus communis]
3 Hb_000472_020 0.0762467168 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
4 Hb_004421_010 0.092774387 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
5 Hb_000477_110 0.0931844973 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
6 Hb_001013_050 0.1025477634 - - unnamed protein product [Coffea canephora]
7 Hb_144703_010 0.1052334846 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
8 Hb_002849_180 0.1053516286 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
9 Hb_002510_100 0.1075413651 - - Root phototropism protein, putative [Ricinus communis]
10 Hb_003849_200 0.1076233862 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
11 Hb_001048_070 0.1094673025 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
12 Hb_106089_010 0.1115378091 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
13 Hb_003835_030 0.1136229324 - - glycosyltransferase, partial [Arabidopsis thaliana]
14 Hb_001544_070 0.1171335932 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
15 Hb_019496_040 0.1179253377 - - kinase family protein [Populus trichocarpa]
16 Hb_002902_040 0.1191761603 - - PREDICTED: peroxidase 51 [Jatropha curcas]
17 Hb_007479_080 0.1204179717 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
18 Hb_000363_250 0.120623493 - - PREDICTED: pirin-like protein [Malus domestica]
19 Hb_008092_020 0.121805819 - - transcription factor, putative [Ricinus communis]
20 Hb_001956_080 0.1218432112 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_000613_250 Hb_000613_250 Hb_000342_020 Hb_000342_020 Hb_000613_250--Hb_000342_020 Hb_000472_020 Hb_000472_020 Hb_000613_250--Hb_000472_020 Hb_004421_010 Hb_004421_010 Hb_000613_250--Hb_004421_010 Hb_000477_110 Hb_000477_110 Hb_000613_250--Hb_000477_110 Hb_001013_050 Hb_001013_050 Hb_000613_250--Hb_001013_050 Hb_144703_010 Hb_144703_010 Hb_000613_250--Hb_144703_010 Hb_000342_020--Hb_000472_020 Hb_002902_040 Hb_002902_040 Hb_000342_020--Hb_002902_040 Hb_000342_020--Hb_144703_010 Hb_019496_040 Hb_019496_040 Hb_000342_020--Hb_019496_040 Hb_002151_020 Hb_002151_020 Hb_000342_020--Hb_002151_020 Hb_001544_070 Hb_001544_070 Hb_000472_020--Hb_001544_070 Hb_001174_030 Hb_001174_030 Hb_000472_020--Hb_001174_030 Hb_000472_020--Hb_144703_010 Hb_174101_010 Hb_174101_010 Hb_000472_020--Hb_174101_010 Hb_000398_140 Hb_000398_140 Hb_004421_010--Hb_000398_140 Hb_001776_100 Hb_001776_100 Hb_004421_010--Hb_001776_100 Hb_001956_080 Hb_001956_080 Hb_004421_010--Hb_001956_080 Hb_012743_020 Hb_012743_020 Hb_004421_010--Hb_012743_020 Hb_004421_010--Hb_000472_020 Hb_006483_090 Hb_006483_090 Hb_000477_110--Hb_006483_090 Hb_000477_110--Hb_000472_020 Hb_006269_010 Hb_006269_010 Hb_000477_110--Hb_006269_010 Hb_000477_110--Hb_001956_080 Hb_001153_090 Hb_001153_090 Hb_000477_110--Hb_001153_090 Hb_003835_030 Hb_003835_030 Hb_001013_050--Hb_003835_030 Hb_008092_020 Hb_008092_020 Hb_001013_050--Hb_008092_020 Hb_000589_330 Hb_000589_330 Hb_001013_050--Hb_000589_330 Hb_001013_050--Hb_000472_020 Hb_002097_130 Hb_002097_130 Hb_001013_050--Hb_002097_130 Hb_000069_540 Hb_000069_540 Hb_144703_010--Hb_000069_540 Hb_144703_010--Hb_019496_040 Hb_008598_010 Hb_008598_010 Hb_144703_010--Hb_008598_010 Hb_144703_010--Hb_002902_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.22285 11.4123 8.56005 14.2834 0.16529 0.327217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109093 0.114427 0.106907 6.23539 8.92366

CAGE analysis