Hb_000589_330

Information

Type -
Description -
Location Contig589: 301154-303220
Sequence    

Annotation

kegg
ID rcu:RCOM_1480100
description kinase, putative (EC:2.7.11.22)
nr
ID XP_002524205.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9M2S4
description L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=2 SV=1
trembl
ID B9SDY6
description Kinase, putative OS=Ricinus communis GN=RCOM_1480100 PE=3 SV=1
Gene Ontology
ID GO:0004672
description l-type lectin-domain containing receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000589_330 0.0 - - kinase, putative [Ricinus communis]
2 Hb_001013_050 0.0871399291 - - unnamed protein product [Coffea canephora]
3 Hb_007007_090 0.0927686261 - - phospholipase d beta, putative [Ricinus communis]
4 Hb_001913_030 0.095701867 - - ankyrin repeat protein [Bruguiera gymnorhiza]
5 Hb_003835_030 0.0978189253 - - glycosyltransferase, partial [Arabidopsis thaliana]
6 Hb_002097_130 0.0982088569 - - tonoplast intrinsic protein [Hevea brasiliensis]
7 Hb_001269_530 0.0989019852 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_001013_080 0.1004435535 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_028928_020 0.1051856045 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
10 Hb_003849_200 0.1055591355 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
11 Hb_001248_170 0.1082980551 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
12 Hb_000116_290 0.1106312143 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
13 Hb_000976_340 0.114003763 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_008092_020 0.1174118969 - - transcription factor, putative [Ricinus communis]
15 Hb_006573_280 0.1182485224 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
16 Hb_033187_020 0.1192709916 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
17 Hb_005074_010 0.1196930422 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
18 Hb_000472_020 0.1211696226 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
19 Hb_003435_040 0.1222737035 - - tonoplast intrinsic protein [Hevea brasiliensis]
20 Hb_003656_170 0.1230533386 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000589_330 Hb_000589_330 Hb_001013_050 Hb_001013_050 Hb_000589_330--Hb_001013_050 Hb_007007_090 Hb_007007_090 Hb_000589_330--Hb_007007_090 Hb_001913_030 Hb_001913_030 Hb_000589_330--Hb_001913_030 Hb_003835_030 Hb_003835_030 Hb_000589_330--Hb_003835_030 Hb_002097_130 Hb_002097_130 Hb_000589_330--Hb_002097_130 Hb_001269_530 Hb_001269_530 Hb_000589_330--Hb_001269_530 Hb_001013_050--Hb_003835_030 Hb_008092_020 Hb_008092_020 Hb_001013_050--Hb_008092_020 Hb_000472_020 Hb_000472_020 Hb_001013_050--Hb_000472_020 Hb_000613_250 Hb_000613_250 Hb_001013_050--Hb_000613_250 Hb_001013_050--Hb_002097_130 Hb_002375_080 Hb_002375_080 Hb_007007_090--Hb_002375_080 Hb_001248_170 Hb_001248_170 Hb_007007_090--Hb_001248_170 Hb_001677_120 Hb_001677_120 Hb_007007_090--Hb_001677_120 Hb_006573_280 Hb_006573_280 Hb_007007_090--Hb_006573_280 Hb_003562_040 Hb_003562_040 Hb_007007_090--Hb_003562_040 Hb_000537_090 Hb_000537_090 Hb_001913_030--Hb_000537_090 Hb_001013_080 Hb_001013_080 Hb_001913_030--Hb_001013_080 Hb_001913_030--Hb_001269_530 Hb_005074_010 Hb_005074_010 Hb_001913_030--Hb_005074_010 Hb_002335_010 Hb_002335_010 Hb_001913_030--Hb_002335_010 Hb_003835_030--Hb_008092_020 Hb_002000_130 Hb_002000_130 Hb_003835_030--Hb_002000_130 Hb_005034_010 Hb_005034_010 Hb_003835_030--Hb_005034_010 Hb_003835_030--Hb_000472_020 Hb_028928_020 Hb_028928_020 Hb_002097_130--Hb_028928_020 Hb_033187_020 Hb_033187_020 Hb_002097_130--Hb_033187_020 Hb_003849_200 Hb_003849_200 Hb_002097_130--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_002097_130--Hb_003435_040 Hb_001269_530--Hb_000537_090 Hb_001269_530--Hb_002335_010 Hb_000732_100 Hb_000732_100 Hb_001269_530--Hb_000732_100 Hb_173107_020 Hb_173107_020 Hb_001269_530--Hb_173107_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0689429 8.72971 3.45279 7.30302 0.0179298 0.0770071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0342428 0.0974876 2.41739 3.5856

CAGE analysis