Hb_173107_020

Information

Type -
Description -
Location Contig173107: 16576-18729
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18130g
description POPTRDRAFT_758009; kinase family protein
nr
ID XP_012067489.1
description PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
swissprot
ID Q9SAH3
description Putative receptor-like protein kinase At1g80870 OS=Arabidopsis thaliana GN=At1g80870 PE=3 SV=1
trembl
ID A0A067LCY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26982 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase at1g80870

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16495: 17178-18045 , PASA_asmbl_16496: 18564-18842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173107_020 0.0 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
2 Hb_000384_020 0.0669777469 - - sucrose phosphate syntase, putative [Ricinus communis]
3 Hb_114733_010 0.074727972 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
4 Hb_002250_140 0.0764962253 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
5 Hb_000991_080 0.0792135069 - - kinase, putative [Ricinus communis]
6 Hb_009771_040 0.085242892 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
7 Hb_000045_080 0.0956889043 - - amino acid transporter, putative [Ricinus communis]
8 Hb_000816_150 0.0979358193 - - oligopeptide transporter, putative [Ricinus communis]
9 Hb_000270_750 0.0981084746 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
10 Hb_000537_090 0.0982382972 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008598_010 0.098980798 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
12 Hb_026050_010 0.1009323032 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_001269_530 0.1013578505 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_010174_200 0.1015950123 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
15 Hb_000732_100 0.1019947153 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
16 Hb_001013_080 0.1045028541 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
17 Hb_007292_050 0.1056375558 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
18 Hb_001913_030 0.108234056 - - ankyrin repeat protein [Bruguiera gymnorhiza]
19 Hb_000162_070 0.1100833173 - - phospholipase C, putative [Ricinus communis]
20 Hb_003435_040 0.1133197559 - - tonoplast intrinsic protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_173107_020 Hb_173107_020 Hb_000384_020 Hb_000384_020 Hb_173107_020--Hb_000384_020 Hb_114733_010 Hb_114733_010 Hb_173107_020--Hb_114733_010 Hb_002250_140 Hb_002250_140 Hb_173107_020--Hb_002250_140 Hb_000991_080 Hb_000991_080 Hb_173107_020--Hb_000991_080 Hb_009771_040 Hb_009771_040 Hb_173107_020--Hb_009771_040 Hb_000045_080 Hb_000045_080 Hb_173107_020--Hb_000045_080 Hb_000816_150 Hb_000816_150 Hb_000384_020--Hb_000816_150 Hb_000384_020--Hb_114733_010 Hb_000384_020--Hb_000991_080 Hb_000162_070 Hb_000162_070 Hb_000384_020--Hb_000162_070 Hb_000384_020--Hb_000045_080 Hb_114733_010--Hb_000816_150 Hb_017700_030 Hb_017700_030 Hb_114733_010--Hb_017700_030 Hb_114733_010--Hb_000991_080 Hb_000732_100 Hb_000732_100 Hb_114733_010--Hb_000732_100 Hb_002250_140--Hb_009771_040 Hb_026050_010 Hb_026050_010 Hb_002250_140--Hb_026050_010 Hb_000258_230 Hb_000258_230 Hb_002250_140--Hb_000258_230 Hb_007103_020 Hb_007103_020 Hb_002250_140--Hb_007103_020 Hb_002335_010 Hb_002335_010 Hb_002250_140--Hb_002335_010 Hb_001013_080 Hb_001013_080 Hb_000991_080--Hb_001013_080 Hb_003435_040 Hb_003435_040 Hb_000991_080--Hb_003435_040 Hb_000991_080--Hb_000162_070 Hb_002168_070 Hb_002168_070 Hb_009771_040--Hb_002168_070 Hb_009771_040--Hb_026050_010 Hb_009771_040--Hb_000258_230 Hb_000434_060 Hb_000434_060 Hb_009771_040--Hb_000434_060 Hb_008598_010 Hb_008598_010 Hb_000045_080--Hb_008598_010 Hb_017862_030 Hb_017862_030 Hb_000045_080--Hb_017862_030 Hb_026144_040 Hb_026144_040 Hb_000045_080--Hb_026144_040 Hb_000045_080--Hb_000162_070 Hb_002151_020 Hb_002151_020 Hb_000045_080--Hb_002151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0388051 3.86695 1.61888 6.0251 0.0354668 0.00800707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.669965 2.56395

CAGE analysis