Hb_017700_030

Information

Type -
Description -
Location Contig17700: 44653-49342
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03620g
description POPTRDRAFT_720699; amino acid transporter family protein
nr
ID XP_012080951.1
description PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
swissprot
ID P47082
description Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1
trembl
ID A0A067K2M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16150 PE=4 SV=1
Gene Ontology
ID GO:0005774
description vacuolar amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16996: 43739-49410 , PASA_asmbl_16997: 44905-49556
cDNA
(Sanger)
(ID:Location)		 006_K21.ab1: 43739-46349

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017700_030 0.0 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
2 Hb_002598_040 0.0587293767 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
3 Hb_000816_150 0.0813006328 - - oligopeptide transporter, putative [Ricinus communis]
4 Hb_114733_010 0.0868898884 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
5 Hb_000403_100 0.0974604594 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
6 Hb_000384_020 0.1097145085 - - sucrose phosphate syntase, putative [Ricinus communis]
7 Hb_003582_030 0.1097394495 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
8 Hb_011985_020 0.112866986 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
9 Hb_002534_070 0.1152749511 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
10 Hb_004450_090 0.1159463765 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
11 Hb_009225_070 0.1175399046 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_005396_030 0.1179531272 - - conserved hypothetical protein [Ricinus communis]
13 Hb_068804_180 0.1186981565 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
14 Hb_000468_050 0.119265208 - - -
15 Hb_000991_080 0.1236896534 - - kinase, putative [Ricinus communis]
16 Hb_173107_020 0.1237248334 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
17 Hb_000732_100 0.1241085342 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
18 Hb_000646_040 0.1276148781 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
19 Hb_080601_010 0.1295790583 - - metallothionein 3-like protein [Hevea brasiliensis]
20 Hb_001999_200 0.1297533894 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_017700_030 Hb_017700_030 Hb_002598_040 Hb_002598_040 Hb_017700_030--Hb_002598_040 Hb_000816_150 Hb_000816_150 Hb_017700_030--Hb_000816_150 Hb_114733_010 Hb_114733_010 Hb_017700_030--Hb_114733_010 Hb_000403_100 Hb_000403_100 Hb_017700_030--Hb_000403_100 Hb_000384_020 Hb_000384_020 Hb_017700_030--Hb_000384_020 Hb_003582_030 Hb_003582_030 Hb_017700_030--Hb_003582_030 Hb_002598_040--Hb_000403_100 Hb_068804_180 Hb_068804_180 Hb_002598_040--Hb_068804_180 Hb_001999_200 Hb_001999_200 Hb_002598_040--Hb_001999_200 Hb_002598_040--Hb_114733_010 Hb_002598_040--Hb_000816_150 Hb_000816_150--Hb_000384_020 Hb_000468_050 Hb_000468_050 Hb_000816_150--Hb_000468_050 Hb_000816_150--Hb_114733_010 Hb_009225_070 Hb_009225_070 Hb_000816_150--Hb_009225_070 Hb_000991_080 Hb_000991_080 Hb_000816_150--Hb_000991_080 Hb_114733_010--Hb_000384_020 Hb_173107_020 Hb_173107_020 Hb_114733_010--Hb_173107_020 Hb_114733_010--Hb_000991_080 Hb_000732_100 Hb_000732_100 Hb_114733_010--Hb_000732_100 Hb_002035_130 Hb_002035_130 Hb_000403_100--Hb_002035_130 Hb_005396_030 Hb_005396_030 Hb_000403_100--Hb_005396_030 Hb_000403_100--Hb_001999_200 Hb_000403_100--Hb_114733_010 Hb_000384_020--Hb_173107_020 Hb_000384_020--Hb_000991_080 Hb_000162_070 Hb_000162_070 Hb_000384_020--Hb_000162_070 Hb_000045_080 Hb_000045_080 Hb_000384_020--Hb_000045_080 Hb_000098_230 Hb_000098_230 Hb_003582_030--Hb_000098_230 Hb_000087_190 Hb_000087_190 Hb_003582_030--Hb_000087_190 Hb_000646_040 Hb_000646_040 Hb_003582_030--Hb_000646_040 Hb_000030_230 Hb_000030_230 Hb_003582_030--Hb_000030_230 Hb_002186_170 Hb_002186_170 Hb_003582_030--Hb_002186_170 Hb_000197_260 Hb_000197_260 Hb_003582_030--Hb_000197_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0145704 0.951167 0.302173 2.09055 0 0.0308386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10882 0.530173

CAGE analysis