Hb_002598_040

Information

Type -
Description -
Location Contig2598: 44700-51670
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023976mg
description hypothetical protein
nr
ID EEC80176.1
description hypothetical protein OsI_22030 [Oryza sativa Indica Group]
swissprot
ID -
description -
trembl
ID B8B3P7
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_22030 PE=3 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter erd6-like 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26925: 7000-51283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002598_040 0.0 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
2 Hb_017700_030 0.0587293767 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
3 Hb_000403_100 0.0871006612 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
4 Hb_068804_180 0.1012235734 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
5 Hb_001999_200 0.102134694 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
6 Hb_114733_010 0.102781357 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
7 Hb_000816_150 0.1068474285 - - oligopeptide transporter, putative [Ricinus communis]
8 Hb_000384_020 0.112451359 - - sucrose phosphate syntase, putative [Ricinus communis]
9 Hb_002534_070 0.1205294269 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
10 Hb_000991_080 0.1206294628 - - kinase, putative [Ricinus communis]
11 Hb_002960_030 0.1268168776 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
12 Hb_173107_020 0.1283454802 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
13 Hb_000020_210 0.1295300422 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
14 Hb_003582_030 0.1299681885 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
15 Hb_002035_130 0.1307653126 - - plasma membrane H+-ATPase [Hevea brasiliensis]
16 Hb_000087_190 0.1353311405 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
17 Hb_000646_040 0.1373053095 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74-like [Jatropha curcas]
18 Hb_154038_040 0.1395761102 - - nutrient reservoir, putative [Ricinus communis]
19 Hb_002053_190 0.1408309766 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
20 Hb_007292_050 0.1411147537 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_002598_040 Hb_002598_040 Hb_017700_030 Hb_017700_030 Hb_002598_040--Hb_017700_030 Hb_000403_100 Hb_000403_100 Hb_002598_040--Hb_000403_100 Hb_068804_180 Hb_068804_180 Hb_002598_040--Hb_068804_180 Hb_001999_200 Hb_001999_200 Hb_002598_040--Hb_001999_200 Hb_114733_010 Hb_114733_010 Hb_002598_040--Hb_114733_010 Hb_000816_150 Hb_000816_150 Hb_002598_040--Hb_000816_150 Hb_017700_030--Hb_000816_150 Hb_017700_030--Hb_114733_010 Hb_017700_030--Hb_000403_100 Hb_000384_020 Hb_000384_020 Hb_017700_030--Hb_000384_020 Hb_003582_030 Hb_003582_030 Hb_017700_030--Hb_003582_030 Hb_002035_130 Hb_002035_130 Hb_000403_100--Hb_002035_130 Hb_005396_030 Hb_005396_030 Hb_000403_100--Hb_005396_030 Hb_000403_100--Hb_001999_200 Hb_000403_100--Hb_114733_010 Hb_154038_040 Hb_154038_040 Hb_068804_180--Hb_154038_040 Hb_068804_180--Hb_017700_030 Hb_001688_030 Hb_001688_030 Hb_068804_180--Hb_001688_030 Hb_068804_180--Hb_000816_150 Hb_068804_180--Hb_000384_020 Hb_000479_060 Hb_000479_060 Hb_001999_200--Hb_000479_060 Hb_002762_100 Hb_002762_100 Hb_001999_200--Hb_002762_100 Hb_001999_200--Hb_017700_030 Hb_001675_310 Hb_001675_310 Hb_001999_200--Hb_001675_310 Hb_114733_010--Hb_000384_020 Hb_173107_020 Hb_173107_020 Hb_114733_010--Hb_173107_020 Hb_114733_010--Hb_000816_150 Hb_000991_080 Hb_000991_080 Hb_114733_010--Hb_000991_080 Hb_000732_100 Hb_000732_100 Hb_114733_010--Hb_000732_100 Hb_000816_150--Hb_000384_020 Hb_000468_050 Hb_000468_050 Hb_000816_150--Hb_000468_050 Hb_009225_070 Hb_009225_070 Hb_000816_150--Hb_009225_070 Hb_000816_150--Hb_000991_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0341057 0.770607 0.375015 1.84488 0 0.0441153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.100627 0.490737

CAGE analysis