Hb_000816_150

Information

Type -
Description -
Location Contig816: 168724-172504
Sequence    

Annotation

kegg
ID rcu:RCOM_0688830
description oligopeptide transporter, putative
nr
ID XP_002520834.1
description oligopeptide transporter, putative [Ricinus communis]
swissprot
ID Q8VZR7
description Protein NRT1/ PTR FAMILY 5.1 OS=Arabidopsis thaliana GN=NPF5.1 PE=2 SV=2
trembl
ID B9S4B5
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_0688830 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_150 0.0 - - oligopeptide transporter, putative [Ricinus communis]
2 Hb_000384_020 0.0669821266 - - sucrose phosphate syntase, putative [Ricinus communis]
3 Hb_000468_050 0.0692329711 - - -
4 Hb_114733_010 0.0783027754 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
5 Hb_017700_030 0.0813006328 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
6 Hb_009225_070 0.0856277339 - - tonoplast intrinsic protein, putative [Ricinus communis]
7 Hb_000991_080 0.0916076484 - - kinase, putative [Ricinus communis]
8 Hb_173107_020 0.0979358193 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
9 Hb_011985_020 0.1049995606 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
10 Hb_000732_100 0.1067239073 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
11 Hb_002598_040 0.1068474285 - - hypothetical protein OsI_22030 [Oryza sativa Indica Group]
12 Hb_002598_020 0.1111418019 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
13 Hb_008948_010 0.1113378411 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
14 Hb_004785_170 0.1124491974 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
15 Hb_000537_090 0.1159773936 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003582_030 0.1161849799 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
17 Hb_001117_180 0.1190959823 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
18 Hb_068804_180 0.1209138255 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
19 Hb_012553_030 0.1214494409 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
20 Hb_000162_070 0.1225923187 - - phospholipase C, putative [Ricinus communis]

Gene co-expression network

sample Hb_000816_150 Hb_000816_150 Hb_000384_020 Hb_000384_020 Hb_000816_150--Hb_000384_020 Hb_000468_050 Hb_000468_050 Hb_000816_150--Hb_000468_050 Hb_114733_010 Hb_114733_010 Hb_000816_150--Hb_114733_010 Hb_017700_030 Hb_017700_030 Hb_000816_150--Hb_017700_030 Hb_009225_070 Hb_009225_070 Hb_000816_150--Hb_009225_070 Hb_000991_080 Hb_000991_080 Hb_000816_150--Hb_000991_080 Hb_173107_020 Hb_173107_020 Hb_000384_020--Hb_173107_020 Hb_000384_020--Hb_114733_010 Hb_000384_020--Hb_000991_080 Hb_000162_070 Hb_000162_070 Hb_000384_020--Hb_000162_070 Hb_000045_080 Hb_000045_080 Hb_000384_020--Hb_000045_080 Hb_000468_050--Hb_009225_070 Hb_012553_030 Hb_012553_030 Hb_000468_050--Hb_012553_030 Hb_002592_070 Hb_002592_070 Hb_000468_050--Hb_002592_070 Hb_000453_290 Hb_000453_290 Hb_000468_050--Hb_000453_290 Hb_004785_170 Hb_004785_170 Hb_000468_050--Hb_004785_170 Hb_114733_010--Hb_173107_020 Hb_114733_010--Hb_017700_030 Hb_114733_010--Hb_000991_080 Hb_000732_100 Hb_000732_100 Hb_114733_010--Hb_000732_100 Hb_002598_040 Hb_002598_040 Hb_017700_030--Hb_002598_040 Hb_000403_100 Hb_000403_100 Hb_017700_030--Hb_000403_100 Hb_017700_030--Hb_000384_020 Hb_003582_030 Hb_003582_030 Hb_017700_030--Hb_003582_030 Hb_009225_070--Hb_002592_070 Hb_011314_010 Hb_011314_010 Hb_009225_070--Hb_011314_010 Hb_009225_070--Hb_012553_030 Hb_022693_090 Hb_022693_090 Hb_009225_070--Hb_022693_090 Hb_001013_080 Hb_001013_080 Hb_000991_080--Hb_001013_080 Hb_000991_080--Hb_173107_020 Hb_003435_040 Hb_003435_040 Hb_000991_080--Hb_003435_040 Hb_000991_080--Hb_000162_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.853 0.710851 4.22365 0.010215 0.0106039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.388663 1.111

CAGE analysis