Hb_004785_170

Information

Type -
Description -
Location Contig4785: 242761-252212
Sequence    

Annotation

kegg
ID rcu:RCOM_0137140
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012073972.1
description PREDICTED: receptor-like protein 12 [Jatropha curcas]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A067KKC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08359 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44574: 241879-242010 , PASA_asmbl_44575: 240560-241779 , PASA_asmbl_44576: 240560-247892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_170 0.0 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
2 Hb_004374_040 0.0781559462 - - PREDICTED: beta-carotene 3-hydroxylase, chloroplastic-like [Jatropha curcas]
3 Hb_008948_010 0.0880555437 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
4 Hb_011985_020 0.0935103184 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
5 Hb_000468_050 0.1041305935 - - -
6 Hb_011314_010 0.1099434098 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
7 Hb_001318_230 0.1107046375 - - Boron transporter, putative [Ricinus communis]
8 Hb_000816_150 0.1124491974 - - oligopeptide transporter, putative [Ricinus communis]
9 Hb_000090_020 0.1164965263 - - acyltransferase, putative [Ricinus communis]
10 Hb_009225_070 0.118155496 - - tonoplast intrinsic protein, putative [Ricinus communis]
11 Hb_002598_020 0.1187458371 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
12 Hb_000453_290 0.1239113504 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
13 Hb_002213_050 0.1286789375 - - PREDICTED: uncharacterized protein LOC105630318 isoform X3 [Jatropha curcas]
14 Hb_017700_030 0.1322259214 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
15 Hb_022693_090 0.1338616633 - - glycosyltransferase, putative [Ricinus communis]
16 Hb_002592_070 0.1370456832 - - hypothetical protein VITISV_020993 [Vitis vinifera]
17 Hb_000732_100 0.1374157294 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
18 Hb_001907_050 0.137858614 - - Receptor like protein 6, putative [Theobroma cacao]
19 Hb_012553_030 0.1378648054 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
20 Hb_003126_120 0.1400768339 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]

Gene co-expression network

sample Hb_004785_170 Hb_004785_170 Hb_004374_040 Hb_004374_040 Hb_004785_170--Hb_004374_040 Hb_008948_010 Hb_008948_010 Hb_004785_170--Hb_008948_010 Hb_011985_020 Hb_011985_020 Hb_004785_170--Hb_011985_020 Hb_000468_050 Hb_000468_050 Hb_004785_170--Hb_000468_050 Hb_011314_010 Hb_011314_010 Hb_004785_170--Hb_011314_010 Hb_001318_230 Hb_001318_230 Hb_004785_170--Hb_001318_230 Hb_004374_040--Hb_011314_010 Hb_002213_050 Hb_002213_050 Hb_004374_040--Hb_002213_050 Hb_004374_040--Hb_011985_020 Hb_000563_570 Hb_000563_570 Hb_004374_040--Hb_000563_570 Hb_009225_070 Hb_009225_070 Hb_004374_040--Hb_009225_070 Hb_005391_050 Hb_005391_050 Hb_008948_010--Hb_005391_050 Hb_002598_020 Hb_002598_020 Hb_008948_010--Hb_002598_020 Hb_008948_010--Hb_011985_020 Hb_004450_090 Hb_004450_090 Hb_008948_010--Hb_004450_090 Hb_000816_150 Hb_000816_150 Hb_008948_010--Hb_000816_150 Hb_011985_020--Hb_000816_150 Hb_017700_030 Hb_017700_030 Hb_011985_020--Hb_017700_030 Hb_011985_020--Hb_004450_090 Hb_114733_010 Hb_114733_010 Hb_011985_020--Hb_114733_010 Hb_000468_050--Hb_009225_070 Hb_012553_030 Hb_012553_030 Hb_000468_050--Hb_012553_030 Hb_000468_050--Hb_000816_150 Hb_002592_070 Hb_002592_070 Hb_000468_050--Hb_002592_070 Hb_000453_290 Hb_000453_290 Hb_000468_050--Hb_000453_290 Hb_011314_010--Hb_009225_070 Hb_022693_090 Hb_022693_090 Hb_011314_010--Hb_022693_090 Hb_003126_120 Hb_003126_120 Hb_011314_010--Hb_003126_120 Hb_003582_030 Hb_003582_030 Hb_011314_010--Hb_003582_030 Hb_000732_100 Hb_000732_100 Hb_001318_230--Hb_000732_100 Hb_001907_050 Hb_001907_050 Hb_001318_230--Hb_001907_050 Hb_000537_090 Hb_000537_090 Hb_001318_230--Hb_000537_090 Hb_001318_230--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_001318_230--Hb_000090_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0231921 0.00297747 0.0547323 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00568513 0.015421

CAGE analysis