Hb_000468_050

Information

Type -
Description -
Location Contig468: 56092-56542
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44157: 44202-61764
cDNA
(Sanger)
(ID:Location)		 046_N03.ab1: 44215-61764 , 046_O04.ab1: 44215-61764

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000468_050 0.0 - - -
2 Hb_009225_070 0.0562978517 - - tonoplast intrinsic protein, putative [Ricinus communis]
3 Hb_012553_030 0.0656643553 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
4 Hb_000816_150 0.0692329711 - - oligopeptide transporter, putative [Ricinus communis]
5 Hb_002592_070 0.0732585849 - - hypothetical protein VITISV_020993 [Vitis vinifera]
6 Hb_000453_290 0.0858717556 - - PREDICTED: dr1-associated corepressor-like [Jatropha curcas]
7 Hb_004785_170 0.1041305935 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_000090_020 0.1072257626 - - acyltransferase, putative [Ricinus communis]
9 Hb_001117_180 0.1083634775 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
10 Hb_022693_090 0.1117257617 - - glycosyltransferase, putative [Ricinus communis]
11 Hb_002598_020 0.112000308 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
12 Hb_011314_010 0.1127331711 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
13 Hb_000384_020 0.1137036077 - - sucrose phosphate syntase, putative [Ricinus communis]
14 Hb_000991_080 0.1147390743 - - kinase, putative [Ricinus communis]
15 Hb_015884_010 0.1151322984 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
16 Hb_000714_070 0.1168292117 transcription factor TF Family: LOB hypothetical protein JCGZ_14754 [Jatropha curcas]
17 Hb_120040_010 0.1180887419 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_103541_010 0.1182070063 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
19 Hb_011985_020 0.1189864369 - - PREDICTED: phospholipase A1-Igamma3, chloroplastic [Jatropha curcas]
20 Hb_017700_030 0.119265208 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000468_050 Hb_000468_050 Hb_009225_070 Hb_009225_070 Hb_000468_050--Hb_009225_070 Hb_012553_030 Hb_012553_030 Hb_000468_050--Hb_012553_030 Hb_000816_150 Hb_000816_150 Hb_000468_050--Hb_000816_150 Hb_002592_070 Hb_002592_070 Hb_000468_050--Hb_002592_070 Hb_000453_290 Hb_000453_290 Hb_000468_050--Hb_000453_290 Hb_004785_170 Hb_004785_170 Hb_000468_050--Hb_004785_170 Hb_009225_070--Hb_002592_070 Hb_009225_070--Hb_000816_150 Hb_011314_010 Hb_011314_010 Hb_009225_070--Hb_011314_010 Hb_009225_070--Hb_012553_030 Hb_022693_090 Hb_022693_090 Hb_009225_070--Hb_022693_090 Hb_012553_030--Hb_002592_070 Hb_015884_010 Hb_015884_010 Hb_012553_030--Hb_015884_010 Hb_103541_010 Hb_103541_010 Hb_012553_030--Hb_103541_010 Hb_000090_020 Hb_000090_020 Hb_012553_030--Hb_000090_020 Hb_000384_020 Hb_000384_020 Hb_000816_150--Hb_000384_020 Hb_114733_010 Hb_114733_010 Hb_000816_150--Hb_114733_010 Hb_017700_030 Hb_017700_030 Hb_000816_150--Hb_017700_030 Hb_000991_080 Hb_000991_080 Hb_000816_150--Hb_000991_080 Hb_002592_070--Hb_000453_290 Hb_001117_180 Hb_001117_180 Hb_002592_070--Hb_001117_180 Hb_002592_070--Hb_022693_090 Hb_000453_290--Hb_022693_090 Hb_002000_100 Hb_002000_100 Hb_000453_290--Hb_002000_100 Hb_027405_010 Hb_027405_010 Hb_000453_290--Hb_027405_010 Hb_001360_020 Hb_001360_020 Hb_000453_290--Hb_001360_020 Hb_004374_040 Hb_004374_040 Hb_004785_170--Hb_004374_040 Hb_008948_010 Hb_008948_010 Hb_004785_170--Hb_008948_010 Hb_011985_020 Hb_011985_020 Hb_004785_170--Hb_011985_020 Hb_004785_170--Hb_011314_010 Hb_001318_230 Hb_001318_230 Hb_004785_170--Hb_001318_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.74017 1.63995 11.9941 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.54658 2.3472

CAGE analysis