Hb_103541_010

Information

Type -
Description -
Location Contig103541: 58-1327
Sequence    

Annotation

kegg
ID rcu:RCOM_0611040
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012089396.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
swissprot
ID Q9LVP0
description Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=2 SV=1
trembl
ID A0A067JIJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23589 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable leucine-rich repeat receptor-like protein kinase at5g63930

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01369: 754-919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103541_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
2 Hb_000090_020 0.0356921944 - - acyltransferase, putative [Ricinus communis]
3 Hb_012553_030 0.079797043 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
4 Hb_050898_010 0.0942361765 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_183209_020 0.1012716699 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
6 Hb_000537_090 0.1035842567 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002598_020 0.1064633291 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
8 Hb_002477_080 0.1101327721 - - hypothetical protein RCOM_0653450 [Ricinus communis]
9 Hb_015884_010 0.1117780704 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
10 Hb_000732_100 0.1129541973 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
11 Hb_000468_050 0.1182070063 - - -
12 Hb_002592_070 0.121128677 - - hypothetical protein VITISV_020993 [Vitis vinifera]
13 Hb_002431_090 0.1232988284 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000899_060 0.1237032731 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
15 Hb_000816_050 0.1238957897 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_000497_170 0.1279044984 - - PREDICTED: uncharacterized protein LOC105647275 [Jatropha curcas]
17 Hb_189034_010 0.1282428101 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_001318_230 0.1309863357 - - Boron transporter, putative [Ricinus communis]
19 Hb_005892_010 0.1330501363 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
20 Hb_002374_520 0.136783272 - - early nodulin 8 precursor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_103541_010 Hb_103541_010 Hb_000090_020 Hb_000090_020 Hb_103541_010--Hb_000090_020 Hb_012553_030 Hb_012553_030 Hb_103541_010--Hb_012553_030 Hb_050898_010 Hb_050898_010 Hb_103541_010--Hb_050898_010 Hb_183209_020 Hb_183209_020 Hb_103541_010--Hb_183209_020 Hb_000537_090 Hb_000537_090 Hb_103541_010--Hb_000537_090 Hb_002598_020 Hb_002598_020 Hb_103541_010--Hb_002598_020 Hb_000090_020--Hb_012553_030 Hb_000090_020--Hb_002598_020 Hb_000090_020--Hb_000537_090 Hb_000732_100 Hb_000732_100 Hb_000090_020--Hb_000732_100 Hb_001318_230 Hb_001318_230 Hb_000090_020--Hb_001318_230 Hb_000468_050 Hb_000468_050 Hb_012553_030--Hb_000468_050 Hb_002592_070 Hb_002592_070 Hb_012553_030--Hb_002592_070 Hb_015884_010 Hb_015884_010 Hb_012553_030--Hb_015884_010 Hb_009225_070 Hb_009225_070 Hb_012553_030--Hb_009225_070 Hb_005892_010 Hb_005892_010 Hb_050898_010--Hb_005892_010 Hb_000922_290 Hb_000922_290 Hb_050898_010--Hb_000922_290 Hb_050898_010--Hb_183209_020 Hb_000137_030 Hb_000137_030 Hb_050898_010--Hb_000137_030 Hb_000816_050 Hb_000816_050 Hb_050898_010--Hb_000816_050 Hb_189034_010 Hb_189034_010 Hb_183209_020--Hb_189034_010 Hb_000002_230 Hb_000002_230 Hb_183209_020--Hb_000002_230 Hb_183209_020--Hb_000137_030 Hb_000203_150 Hb_000203_150 Hb_183209_020--Hb_000203_150 Hb_001913_030 Hb_001913_030 Hb_000537_090--Hb_001913_030 Hb_000537_090--Hb_000732_100 Hb_000537_090--Hb_002598_020 Hb_001269_530 Hb_001269_530 Hb_000537_090--Hb_001269_530 Hb_000537_090--Hb_001318_230 Hb_001013_080 Hb_001013_080 Hb_000537_090--Hb_001013_080 Hb_026144_040 Hb_026144_040 Hb_002598_020--Hb_026144_040 Hb_000162_070 Hb_000162_070 Hb_002598_020--Hb_000162_070 Hb_008598_010 Hb_008598_010 Hb_002598_020--Hb_008598_010 Hb_002598_020--Hb_001318_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.78961 0.511701 4.2812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.16088 0.899429

CAGE analysis