Hb_005892_010

Information

Type -
Description -
Location Contig5892: 8295-8696
Sequence    

Annotation

kegg
ID rcu:RCOM_1168380
description hypothetical protein
nr
ID XP_012069878.1
description PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L783
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02363 PE=4 SV=1
Gene Ontology
ID GO:0009561
description embryo sac development arrest

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50116: 8328-8863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005892_010 0.0 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
2 Hb_000922_290 0.0630862305 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
3 Hb_050898_010 0.0763627692 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
4 Hb_001610_050 0.0997049247 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
5 Hb_001587_220 0.1078096569 - - receptor protein kinase, putative [Ricinus communis]
6 Hb_000137_030 0.1088636886 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
7 Hb_000702_040 0.1104725617 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
8 Hb_000007_210 0.1134276403 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
9 Hb_000987_080 0.1146036867 - - light-inducible protein atls1, putative [Ricinus communis]
10 Hb_000723_060 0.1222498338 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
11 Hb_000816_050 0.1301310504 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
12 Hb_183209_020 0.1301653144 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
13 Hb_103541_010 0.1330501363 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
14 Hb_006573_060 0.1351582385 - - hypothetical protein [Bruguiera gymnorhiza]
15 Hb_011101_010 0.1383311434 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
16 Hb_000101_140 0.1387748571 - - amino acid transporter, putative [Ricinus communis]
17 Hb_004586_230 0.1390254571 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000656_370 0.1404406933 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_000090_020 0.142619742 - - acyltransferase, putative [Ricinus communis]
20 Hb_145139_010 0.1456416429 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_005892_010 Hb_005892_010 Hb_000922_290 Hb_000922_290 Hb_005892_010--Hb_000922_290 Hb_050898_010 Hb_050898_010 Hb_005892_010--Hb_050898_010 Hb_001610_050 Hb_001610_050 Hb_005892_010--Hb_001610_050 Hb_001587_220 Hb_001587_220 Hb_005892_010--Hb_001587_220 Hb_000137_030 Hb_000137_030 Hb_005892_010--Hb_000137_030 Hb_000702_040 Hb_000702_040 Hb_005892_010--Hb_000702_040 Hb_000987_080 Hb_000987_080 Hb_000922_290--Hb_000987_080 Hb_000922_290--Hb_050898_010 Hb_000007_210 Hb_000007_210 Hb_000922_290--Hb_000007_210 Hb_000656_370 Hb_000656_370 Hb_000922_290--Hb_000656_370 Hb_145139_010 Hb_145139_010 Hb_000922_290--Hb_145139_010 Hb_183209_020 Hb_183209_020 Hb_050898_010--Hb_183209_020 Hb_050898_010--Hb_000137_030 Hb_103541_010 Hb_103541_010 Hb_050898_010--Hb_103541_010 Hb_000816_050 Hb_000816_050 Hb_050898_010--Hb_000816_050 Hb_001610_050--Hb_000702_040 Hb_021443_020 Hb_021443_020 Hb_001610_050--Hb_021443_020 Hb_002639_120 Hb_002639_120 Hb_001610_050--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_001610_050--Hb_006890_050 Hb_001227_010 Hb_001227_010 Hb_001610_050--Hb_001227_010 Hb_006573_060 Hb_006573_060 Hb_001587_220--Hb_006573_060 Hb_001587_220--Hb_000702_040 Hb_011101_010 Hb_011101_010 Hb_001587_220--Hb_011101_010 Hb_004586_230 Hb_004586_230 Hb_001587_220--Hb_004586_230 Hb_001587_220--Hb_000137_030 Hb_189034_010 Hb_189034_010 Hb_000137_030--Hb_189034_010 Hb_000723_060 Hb_000723_060 Hb_000137_030--Hb_000723_060 Hb_000137_030--Hb_183209_020 Hb_000702_040--Hb_004586_230 Hb_000702_040--Hb_002639_120 Hb_000702_040--Hb_006890_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.04689 0.598836 5.41297 0 0.075856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.46007 0.818847

CAGE analysis