Hb_006573_060

Information

Type -
Description -
Location Contig6573: 44761-48444
Sequence    

Annotation

kegg
ID rcu:RCOM_2072230
description metal ion binding protein, putative
nr
ID BAG15861.1
description hypothetical protein [Bruguiera gymnorhiza]
swissprot
ID -
description -
trembl
ID B1Q4T5
description Uncharacterized protein OS=Bruguiera gymnorhiza PE=2 SV=1
Gene Ontology
ID GO:0046872
description late blight resistance protein homolog r1b-19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52805: 44781-45604 , PASA_asmbl_52806: 44894-45895
cDNA
(Sanger)
(ID:Location)		 018_O13.ab1: 48186-48558 , 023_B21.ab1: 48186-48558

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_060 0.0 - - hypothetical protein [Bruguiera gymnorhiza]
2 Hb_001587_220 0.0706388606 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_005389_090 0.0950887385 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
4 Hb_000991_110 0.1024475735 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
5 Hb_000702_040 0.1131758735 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
6 Hb_004586_230 0.1154420108 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003939_090 0.1183394294 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_000137_030 0.1213240484 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Citrus sinensis]
9 Hb_001897_030 0.1227653697 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
10 Hb_145268_010 0.1259342686 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
11 Hb_000252_190 0.1263844498 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
12 Hb_012395_260 0.127526205 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
13 Hb_001195_650 0.1287940932 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
14 Hb_008352_020 0.1300750571 - - hypothetical protein [Cecembia lonarensis]
15 Hb_000723_060 0.1319152811 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
16 Hb_007313_050 0.1325501871 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
17 Hb_010642_010 0.1332240731 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
18 Hb_005892_010 0.1351582385 - - PREDICTED: uncharacterized protein LOC105632168 [Jatropha curcas]
19 Hb_132517_010 0.1385106232 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
20 Hb_011101_010 0.1391776173 - - hypothetical protein JCGZ_25132 [Jatropha curcas]

Gene co-expression network

sample Hb_006573_060 Hb_006573_060 Hb_001587_220 Hb_001587_220 Hb_006573_060--Hb_001587_220 Hb_005389_090 Hb_005389_090 Hb_006573_060--Hb_005389_090 Hb_000991_110 Hb_000991_110 Hb_006573_060--Hb_000991_110 Hb_000702_040 Hb_000702_040 Hb_006573_060--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_006573_060--Hb_004586_230 Hb_003939_090 Hb_003939_090 Hb_006573_060--Hb_003939_090 Hb_001587_220--Hb_000702_040 Hb_005892_010 Hb_005892_010 Hb_001587_220--Hb_005892_010 Hb_011101_010 Hb_011101_010 Hb_001587_220--Hb_011101_010 Hb_001587_220--Hb_004586_230 Hb_000137_030 Hb_000137_030 Hb_001587_220--Hb_000137_030 Hb_132517_010 Hb_132517_010 Hb_005389_090--Hb_132517_010 Hb_001897_030 Hb_001897_030 Hb_005389_090--Hb_001897_030 Hb_005389_090--Hb_000991_110 Hb_007313_050 Hb_007313_050 Hb_005389_090--Hb_007313_050 Hb_005396_110 Hb_005396_110 Hb_005389_090--Hb_005396_110 Hb_000991_110--Hb_001897_030 Hb_000723_060 Hb_000723_060 Hb_000991_110--Hb_000723_060 Hb_002049_030 Hb_002049_030 Hb_000991_110--Hb_002049_030 Hb_000991_110--Hb_007313_050 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_000702_040--Hb_004586_230 Hb_002639_120 Hb_002639_120 Hb_000702_040--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_000702_040--Hb_006890_050 Hb_000702_040--Hb_005892_010 Hb_012395_260 Hb_012395_260 Hb_004586_230--Hb_012395_260 Hb_000365_190 Hb_000365_190 Hb_004586_230--Hb_000365_190 Hb_001195_650 Hb_001195_650 Hb_004586_230--Hb_001195_650 Hb_015884_010 Hb_015884_010 Hb_003939_090--Hb_015884_010 Hb_003939_090--Hb_007313_050 Hb_010642_010 Hb_010642_010 Hb_003939_090--Hb_010642_010 Hb_003939_090--Hb_000702_040 Hb_035006_010 Hb_035006_010 Hb_003939_090--Hb_035006_010 Hb_021443_020 Hb_021443_020 Hb_003939_090--Hb_021443_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 42.6054 10.0995 37.1693 0.0790582 0.0237022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.145456 0.0882322 6.34418 3.33082

CAGE analysis