Hb_001897_030

Information

Type -
Description -
Location Contig1897: 55755-57138
Sequence    

Annotation

kegg
ID cit:102609419
description actin-depolymerizing factor 5-like
nr
ID XP_012081752.1
description PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
swissprot
ID Q9ZNT3
description Actin-depolymerizing factor 5 OS=Arabidopsis thaliana GN=ADF5 PE=1 SV=1
trembl
ID A0A067K3K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18795 PE=4 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18821: 55675-55835 , PASA_asmbl_18822: 56262-56354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001897_030 0.0 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
2 Hb_005389_090 0.072824792 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
3 Hb_132517_010 0.0886621892 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
4 Hb_000991_110 0.103277759 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
5 Hb_000509_040 0.1040828296 - - hypothetical protein VITISV_009716 [Vitis vinifera]
6 Hb_005396_110 0.1069596463 - - conserved hypothetical protein [Ricinus communis]
7 Hb_087468_010 0.107685112 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
8 Hb_024357_010 0.1108311171 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
9 Hb_003864_020 0.1171913474 - - kinase, putative [Ricinus communis]
10 Hb_006573_060 0.1227653697 - - hypothetical protein [Bruguiera gymnorhiza]
11 Hb_000723_060 0.1270029939 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
12 Hb_000252_190 0.1291232387 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
13 Hb_002049_030 0.133000723 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]
14 Hb_000111_150 0.1342369486 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
15 Hb_001568_120 0.1376620129 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
16 Hb_024857_010 0.1388992337 - - glutaredoxin 2.1 [Hevea brasiliensis]
17 Hb_007313_050 0.1454209332 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_001059_050 0.1462128149 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
19 Hb_003602_090 0.1514885465 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
20 Hb_005605_030 0.1531328633 - - hypothetical protein JCGZ_01308 [Jatropha curcas]

Gene co-expression network

sample Hb_001897_030 Hb_001897_030 Hb_005389_090 Hb_005389_090 Hb_001897_030--Hb_005389_090 Hb_132517_010 Hb_132517_010 Hb_001897_030--Hb_132517_010 Hb_000991_110 Hb_000991_110 Hb_001897_030--Hb_000991_110 Hb_000509_040 Hb_000509_040 Hb_001897_030--Hb_000509_040 Hb_005396_110 Hb_005396_110 Hb_001897_030--Hb_005396_110 Hb_087468_010 Hb_087468_010 Hb_001897_030--Hb_087468_010 Hb_005389_090--Hb_132517_010 Hb_006573_060 Hb_006573_060 Hb_005389_090--Hb_006573_060 Hb_005389_090--Hb_000991_110 Hb_007313_050 Hb_007313_050 Hb_005389_090--Hb_007313_050 Hb_005389_090--Hb_005396_110 Hb_132517_010--Hb_005396_110 Hb_001059_050 Hb_001059_050 Hb_132517_010--Hb_001059_050 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_132517_010--Hb_001227_010 Hb_000991_110--Hb_006573_060 Hb_000723_060 Hb_000723_060 Hb_000991_110--Hb_000723_060 Hb_002049_030 Hb_002049_030 Hb_000991_110--Hb_002049_030 Hb_000991_110--Hb_007313_050 Hb_000509_040--Hb_005396_110 Hb_005605_030 Hb_005605_030 Hb_000509_040--Hb_005605_030 Hb_000111_150 Hb_000111_150 Hb_000509_040--Hb_000111_150 Hb_000509_040--Hb_002049_030 Hb_000509_040--Hb_132517_010 Hb_005396_110--Hb_000111_150 Hb_005396_110--Hb_001059_050 Hb_005396_110--Hb_087468_010 Hb_024857_010 Hb_024857_010 Hb_087468_010--Hb_024857_010 Hb_087468_010--Hb_000111_150 Hb_000252_190 Hb_000252_190 Hb_087468_010--Hb_000252_190 Hb_087468_010--Hb_132517_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96725 128.014 24.137 81.4612 0.4693 0.192602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 17.446 2.04644

CAGE analysis