Hb_000509_040

Information

Type -
Description -
Location Contig509: 163888-165345
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_680342
description hypothetical protein
nr
ID CAN80105.1
description hypothetical protein VITISV_009716 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AIG0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009716 PE=4 SV=1
Gene Ontology
ID GO:0008762
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000509_040 0.0 - - hypothetical protein VITISV_009716 [Vitis vinifera]
2 Hb_005396_110 0.0608927382 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005605_030 0.0968646784 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
4 Hb_001897_030 0.1040828296 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
5 Hb_000111_150 0.1044085068 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
6 Hb_002049_030 0.1061221425 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]
7 Hb_132517_010 0.114863741 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
8 Hb_000991_110 0.123564632 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
9 Hb_005389_090 0.1341589339 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
10 Hb_000028_360 0.1360452997 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_001059_050 0.1390626909 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
12 Hb_087468_010 0.1393674905 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
13 Hb_001568_120 0.1461928015 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
14 Hb_007407_010 0.1485072482 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
15 Hb_007403_010 0.1518949222 - - hypothetical protein JCGZ_11090 [Jatropha curcas]
16 Hb_004195_030 0.1541786834 - - hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
17 Hb_000000_280 0.1564859348 - - conserved hypothetical protein [Ricinus communis]
18 Hb_138705_010 0.1568032621 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
19 Hb_024857_010 0.1575870251 - - glutaredoxin 2.1 [Hevea brasiliensis]
20 Hb_041145_010 0.1595126066 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]

Gene co-expression network

sample Hb_000509_040 Hb_000509_040 Hb_005396_110 Hb_005396_110 Hb_000509_040--Hb_005396_110 Hb_005605_030 Hb_005605_030 Hb_000509_040--Hb_005605_030 Hb_001897_030 Hb_001897_030 Hb_000509_040--Hb_001897_030 Hb_000111_150 Hb_000111_150 Hb_000509_040--Hb_000111_150 Hb_002049_030 Hb_002049_030 Hb_000509_040--Hb_002049_030 Hb_132517_010 Hb_132517_010 Hb_000509_040--Hb_132517_010 Hb_005396_110--Hb_132517_010 Hb_005396_110--Hb_000111_150 Hb_001059_050 Hb_001059_050 Hb_005396_110--Hb_001059_050 Hb_005396_110--Hb_001897_030 Hb_087468_010 Hb_087468_010 Hb_005396_110--Hb_087468_010 Hb_005605_030--Hb_000111_150 Hb_007407_010 Hb_007407_010 Hb_005605_030--Hb_007407_010 Hb_000028_360 Hb_000028_360 Hb_005605_030--Hb_000028_360 Hb_000133_060 Hb_000133_060 Hb_005605_030--Hb_000133_060 Hb_002922_010 Hb_002922_010 Hb_005605_030--Hb_002922_010 Hb_005389_090 Hb_005389_090 Hb_001897_030--Hb_005389_090 Hb_001897_030--Hb_132517_010 Hb_000991_110 Hb_000991_110 Hb_001897_030--Hb_000991_110 Hb_001897_030--Hb_087468_010 Hb_000111_150--Hb_087468_010 Hb_000111_150--Hb_000028_360 Hb_000111_150--Hb_132517_010 Hb_138705_010 Hb_138705_010 Hb_002049_030--Hb_138705_010 Hb_001019_140 Hb_001019_140 Hb_002049_030--Hb_001019_140 Hb_002049_030--Hb_000991_110 Hb_048937_010 Hb_048937_010 Hb_002049_030--Hb_048937_010 Hb_145268_010 Hb_145268_010 Hb_002049_030--Hb_145268_010 Hb_132517_010--Hb_005389_090 Hb_132517_010--Hb_001059_050 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_132517_010--Hb_001227_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0650405 0.0114141 0.0349212 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0104045 0

CAGE analysis