Hb_087468_010

Information

Type -
Description -
Location Contig87468: 310-939
Sequence    

Annotation

kegg
ID vvi:100246093
description uncharacterized LOC100246093
nr
ID XP_010660145.1
description PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C6R2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007222 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087468_010 0.0 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
2 Hb_024857_010 0.0823598124 - - glutaredoxin 2.1 [Hevea brasiliensis]
3 Hb_000111_150 0.0985921637 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
4 Hb_000252_190 0.1011082584 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
5 Hb_001897_030 0.107685112 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
6 Hb_132517_010 0.112939049 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
7 Hb_005396_110 0.1141276608 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003800_010 0.1208822609 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
9 Hb_002236_020 0.1219579397 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
10 Hb_000417_230 0.1301047214 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005389_090 0.1310152009 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
12 Hb_004607_180 0.1333993581 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004195_030 0.1373689298 - - hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
14 Hb_000509_040 0.1393674905 - - hypothetical protein VITISV_009716 [Vitis vinifera]
15 Hb_024357_010 0.1419133216 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
16 Hb_001131_100 0.1465235134 - - PREDICTED: uncharacterized protein LOC105638386 [Jatropha curcas]
17 Hb_017434_020 0.1465601566 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
18 Hb_002239_030 0.1489363264 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
19 Hb_007305_040 0.1489413346 - - Nodulin-26, putative [Ricinus communis]
20 Hb_005183_010 0.1543426112 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]

Gene co-expression network

sample Hb_087468_010 Hb_087468_010 Hb_024857_010 Hb_024857_010 Hb_087468_010--Hb_024857_010 Hb_000111_150 Hb_000111_150 Hb_087468_010--Hb_000111_150 Hb_000252_190 Hb_000252_190 Hb_087468_010--Hb_000252_190 Hb_001897_030 Hb_001897_030 Hb_087468_010--Hb_001897_030 Hb_132517_010 Hb_132517_010 Hb_087468_010--Hb_132517_010 Hb_005396_110 Hb_005396_110 Hb_087468_010--Hb_005396_110 Hb_002236_020 Hb_002236_020 Hb_024857_010--Hb_002236_020 Hb_000656_370 Hb_000656_370 Hb_024857_010--Hb_000656_370 Hb_024857_010--Hb_000252_190 Hb_002239_030 Hb_002239_030 Hb_024857_010--Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_024857_010--Hb_000101_140 Hb_005605_030 Hb_005605_030 Hb_000111_150--Hb_005605_030 Hb_000111_150--Hb_005396_110 Hb_000509_040 Hb_000509_040 Hb_000111_150--Hb_000509_040 Hb_000028_360 Hb_000028_360 Hb_000111_150--Hb_000028_360 Hb_000111_150--Hb_132517_010 Hb_000252_190--Hb_002236_020 Hb_005714_140 Hb_005714_140 Hb_000252_190--Hb_005714_140 Hb_003800_010 Hb_003800_010 Hb_000252_190--Hb_003800_010 Hb_000252_190--Hb_000656_370 Hb_005389_090 Hb_005389_090 Hb_001897_030--Hb_005389_090 Hb_001897_030--Hb_132517_010 Hb_000991_110 Hb_000991_110 Hb_001897_030--Hb_000991_110 Hb_001897_030--Hb_000509_040 Hb_001897_030--Hb_005396_110 Hb_132517_010--Hb_005389_090 Hb_132517_010--Hb_005396_110 Hb_001059_050 Hb_001059_050 Hb_132517_010--Hb_001059_050 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_132517_010--Hb_001227_010 Hb_005396_110--Hb_000509_040 Hb_005396_110--Hb_001059_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.051348 7.35124 0.600752 3.71529 0 0.036079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.604199 0.144032

CAGE analysis