Hb_002236_020

Information

Type -
Description -
Location Contig2236: 48001-51572
Sequence    

Annotation

kegg
ID rcu:RCOM_1312260
description kinesin light chain, putative
nr
ID XP_012086672.1
description PREDICTED: nephrocystin-3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0F6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20415 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23266: 52535-53073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002236_020 0.0 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
2 Hb_024857_010 0.0702430856 - - glutaredoxin 2.1 [Hevea brasiliensis]
3 Hb_000656_370 0.0715463627 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_000252_190 0.0773303935 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
5 Hb_007305_040 0.089915764 - - Nodulin-26, putative [Ricinus communis]
6 Hb_004122_020 0.1035473235 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
7 Hb_002968_010 0.1055925464 - - PREDICTED: pectinesterase [Jatropha curcas]
8 Hb_000260_130 0.1191567666 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
9 Hb_000101_140 0.1198221126 - - amino acid transporter, putative [Ricinus communis]
10 Hb_002239_030 0.1214291838 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
11 Hb_087468_010 0.1219579397 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
12 Hb_002267_030 0.124199074 - - hypothetical protein JCGZ_24883 [Jatropha curcas]
13 Hb_005714_140 0.1285153515 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_145139_010 0.1290233249 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
15 Hb_000625_040 0.1310068184 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
16 Hb_011101_010 0.1344647866 - - hypothetical protein JCGZ_25132 [Jatropha curcas]
17 Hb_002475_010 0.1365962087 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
18 Hb_000000_070 0.140269629 - - allene oxide synthase [Hevea brasiliensis]
19 Hb_004531_010 0.1427723292 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
20 Hb_008550_030 0.1441591983 - - PREDICTED: tonoplast dicarboxylate transporter [Jatropha curcas]

Gene co-expression network

sample Hb_002236_020 Hb_002236_020 Hb_024857_010 Hb_024857_010 Hb_002236_020--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_002236_020--Hb_000656_370 Hb_000252_190 Hb_000252_190 Hb_002236_020--Hb_000252_190 Hb_007305_040 Hb_007305_040 Hb_002236_020--Hb_007305_040 Hb_004122_020 Hb_004122_020 Hb_002236_020--Hb_004122_020 Hb_002968_010 Hb_002968_010 Hb_002236_020--Hb_002968_010 Hb_087468_010 Hb_087468_010 Hb_024857_010--Hb_087468_010 Hb_024857_010--Hb_000656_370 Hb_024857_010--Hb_000252_190 Hb_002239_030 Hb_002239_030 Hb_024857_010--Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_024857_010--Hb_000101_140 Hb_000656_370--Hb_002968_010 Hb_000656_370--Hb_000101_140 Hb_145139_010 Hb_145139_010 Hb_000656_370--Hb_145139_010 Hb_000656_370--Hb_004122_020 Hb_000252_190--Hb_087468_010 Hb_005714_140 Hb_005714_140 Hb_000252_190--Hb_005714_140 Hb_003800_010 Hb_003800_010 Hb_000252_190--Hb_003800_010 Hb_000252_190--Hb_000656_370 Hb_000625_040 Hb_000625_040 Hb_007305_040--Hb_000625_040 Hb_000347_370 Hb_000347_370 Hb_007305_040--Hb_000347_370 Hb_007305_040--Hb_024857_010 Hb_004531_010 Hb_004531_010 Hb_007305_040--Hb_004531_010 Hb_000260_130 Hb_000260_130 Hb_007305_040--Hb_000260_130 Hb_004122_020--Hb_002968_010 Hb_006052_040 Hb_006052_040 Hb_004122_020--Hb_006052_040 Hb_006198_060 Hb_006198_060 Hb_004122_020--Hb_006198_060 Hb_002475_010 Hb_002475_010 Hb_004122_020--Hb_002475_010 Hb_000000_070 Hb_000000_070 Hb_004122_020--Hb_000000_070 Hb_002968_010--Hb_000101_140 Hb_002968_010--Hb_145139_010 Hb_000072_160 Hb_000072_160 Hb_002968_010--Hb_000072_160 Hb_002968_010--Hb_002475_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.772232 0.062183 0.309638 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0820189 0.0608447

CAGE analysis