Hb_003800_010

Information

Type -
Description -
Location Contig3800: 6393-8460
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G057400g
description hypothetical protein
nr
ID XP_012090795.1
description PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E9JFW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02469 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38575: 7203-8281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003800_010 0.0 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
2 Hb_000252_190 0.1148785274 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
3 Hb_004143_050 0.119829031 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
4 Hb_087468_010 0.1208822609 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
5 Hb_000417_230 0.1296532062 - - conserved hypothetical protein [Ricinus communis]
6 Hb_052113_020 0.1361376084 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
7 Hb_005687_060 0.136818323 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
8 Hb_004968_050 0.1383751166 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
9 Hb_001213_140 0.141447613 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
10 Hb_004607_180 0.1436050788 - - conserved hypothetical protein [Ricinus communis]
11 Hb_024357_010 0.1442947714 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
12 Hb_005389_090 0.1448093 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
13 Hb_002107_080 0.1453320549 - - JHL20J20.3 [Jatropha curcas]
14 Hb_132517_010 0.1464707993 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
15 Hb_004659_110 0.1468926827 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
16 Hb_024857_010 0.1473906287 - - glutaredoxin 2.1 [Hevea brasiliensis]
17 Hb_008725_190 0.1504811833 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
18 Hb_029238_020 0.1506339718 - - PREDICTED: expansin-like A1 [Jatropha curcas]
19 Hb_002025_120 0.1507847536 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
20 Hb_000777_020 0.1529024102 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]

Gene co-expression network

sample Hb_003800_010 Hb_003800_010 Hb_000252_190 Hb_000252_190 Hb_003800_010--Hb_000252_190 Hb_004143_050 Hb_004143_050 Hb_003800_010--Hb_004143_050 Hb_087468_010 Hb_087468_010 Hb_003800_010--Hb_087468_010 Hb_000417_230 Hb_000417_230 Hb_003800_010--Hb_000417_230 Hb_052113_020 Hb_052113_020 Hb_003800_010--Hb_052113_020 Hb_005687_060 Hb_005687_060 Hb_003800_010--Hb_005687_060 Hb_002236_020 Hb_002236_020 Hb_000252_190--Hb_002236_020 Hb_024857_010 Hb_024857_010 Hb_000252_190--Hb_024857_010 Hb_000252_190--Hb_087468_010 Hb_005714_140 Hb_005714_140 Hb_000252_190--Hb_005714_140 Hb_000656_370 Hb_000656_370 Hb_000252_190--Hb_000656_370 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_000245_270 Hb_000245_270 Hb_004143_050--Hb_000245_270 Hb_019026_030 Hb_019026_030 Hb_004143_050--Hb_019026_030 Hb_000506_130 Hb_000506_130 Hb_004143_050--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_004143_050--Hb_029238_020 Hb_087468_010--Hb_024857_010 Hb_000111_150 Hb_000111_150 Hb_087468_010--Hb_000111_150 Hb_001897_030 Hb_001897_030 Hb_087468_010--Hb_001897_030 Hb_132517_010 Hb_132517_010 Hb_087468_010--Hb_132517_010 Hb_005396_110 Hb_005396_110 Hb_087468_010--Hb_005396_110 Hb_094839_010 Hb_094839_010 Hb_000417_230--Hb_094839_010 Hb_002107_080 Hb_002107_080 Hb_000417_230--Hb_002107_080 Hb_073973_180 Hb_073973_180 Hb_000417_230--Hb_073973_180 Hb_010573_030 Hb_010573_030 Hb_000417_230--Hb_010573_030 Hb_003071_040 Hb_003071_040 Hb_000417_230--Hb_003071_040 Hb_004968_050 Hb_004968_050 Hb_000417_230--Hb_004968_050 Hb_052113_020--Hb_000506_130 Hb_052113_020--Hb_000245_270 Hb_002042_190 Hb_002042_190 Hb_052113_020--Hb_002042_190 Hb_052113_020--Hb_029238_020 Hb_052113_020--Hb_004143_050 Hb_001481_110 Hb_001481_110 Hb_005687_060--Hb_001481_110 Hb_000369_050 Hb_000369_050 Hb_005687_060--Hb_000369_050 Hb_002639_120 Hb_002639_120 Hb_005687_060--Hb_002639_120 Hb_007304_100 Hb_007304_100 Hb_005687_060--Hb_007304_100 Hb_000702_040 Hb_000702_040 Hb_005687_060--Hb_000702_040 Hb_001610_050 Hb_001610_050 Hb_005687_060--Hb_001610_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0332252 47.9829 4.04417 29.2633 0.066772 0.114336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229915 1.08454 0.32393 2.83904 1.7959

CAGE analysis