Hb_007304_100

Information

Type -
Description -
Location Contig7304: 96809-100153
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21990g
description leucine-rich repeat transmembrane protein kinase
nr
ID XP_012086037.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
swissprot
ID C0LGF5
description Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2
trembl
ID A0A067JQL2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22271 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g34110

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55934: 98700-99001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007304_100 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Jatropha curcas]
2 Hb_005687_060 0.1233919538 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
3 Hb_001481_110 0.150844102 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
4 Hb_000805_330 0.1551621382 - - PREDICTED: ricin-like [Elaeis guineensis]
5 Hb_008725_190 0.1558027879 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 5-like [Jatropha curcas]
6 Hb_003906_150 0.1598320262 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
7 Hb_055993_010 0.1709817572 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
8 Hb_000369_050 0.1771167614 - - Ankyrin repeat family protein, putative [Theobroma cacao]
9 Hb_005183_010 0.1791818141 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
10 Hb_009620_010 0.1811852769 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
11 Hb_001227_010 0.1814118068 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
12 Hb_002639_120 0.1855885808 - - unnamed protein product [Vitis vinifera]
13 Hb_000003_760 0.185847954 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
14 Hb_008092_030 0.1866360241 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
15 Hb_000733_090 0.1867828887 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
16 Hb_000604_050 0.1868678343 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
17 Hb_005054_010 0.1881219579 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000661_010 0.1908734834 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
19 Hb_103149_010 0.1908937842 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
20 Hb_003800_010 0.1914184969 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]

Gene co-expression network

sample Hb_007304_100 Hb_007304_100 Hb_005687_060 Hb_005687_060 Hb_007304_100--Hb_005687_060 Hb_001481_110 Hb_001481_110 Hb_007304_100--Hb_001481_110 Hb_000805_330 Hb_000805_330 Hb_007304_100--Hb_000805_330 Hb_008725_190 Hb_008725_190 Hb_007304_100--Hb_008725_190 Hb_003906_150 Hb_003906_150 Hb_007304_100--Hb_003906_150 Hb_055993_010 Hb_055993_010 Hb_007304_100--Hb_055993_010 Hb_005687_060--Hb_001481_110 Hb_000369_050 Hb_000369_050 Hb_005687_060--Hb_000369_050 Hb_002639_120 Hb_002639_120 Hb_005687_060--Hb_002639_120 Hb_000702_040 Hb_000702_040 Hb_005687_060--Hb_000702_040 Hb_001610_050 Hb_001610_050 Hb_005687_060--Hb_001610_050 Hb_001481_110--Hb_000369_050 Hb_001481_110--Hb_001610_050 Hb_006816_540 Hb_006816_540 Hb_001481_110--Hb_006816_540 Hb_000987_080 Hb_000987_080 Hb_001481_110--Hb_000987_080 Hb_000008_040 Hb_000008_040 Hb_000805_330--Hb_000008_040 Hb_000318_320 Hb_000318_320 Hb_000805_330--Hb_000318_320 Hb_000805_330--Hb_008725_190 Hb_005183_010 Hb_005183_010 Hb_000805_330--Hb_005183_010 Hb_007007_110 Hb_007007_110 Hb_000805_330--Hb_007007_110 Hb_003800_010 Hb_003800_010 Hb_008725_190--Hb_003800_010 Hb_001227_010 Hb_001227_010 Hb_008725_190--Hb_001227_010 Hb_131957_010 Hb_131957_010 Hb_008725_190--Hb_131957_010 Hb_043115_010 Hb_043115_010 Hb_008725_190--Hb_043115_010 Hb_000661_010 Hb_000661_010 Hb_008725_190--Hb_000661_010 Hb_000604_050 Hb_000604_050 Hb_003906_150--Hb_000604_050 Hb_001318_180 Hb_001318_180 Hb_003906_150--Hb_001318_180 Hb_008566_070 Hb_008566_070 Hb_003906_150--Hb_008566_070 Hb_111985_090 Hb_111985_090 Hb_003906_150--Hb_111985_090 Hb_004007_190 Hb_004007_190 Hb_003906_150--Hb_004007_190 Hb_000983_110 Hb_000983_110 Hb_003906_150--Hb_000983_110 Hb_055993_010--Hb_005687_060 Hb_160459_030 Hb_160459_030 Hb_055993_010--Hb_160459_030 Hb_055993_010--Hb_005183_010 Hb_055993_010--Hb_002639_120 Hb_004195_030 Hb_004195_030 Hb_055993_010--Hb_004195_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0176785 0.648956 0.0392371 0.75255 0.0165432 0.0157267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0133585 0.0420493 0 0.0250059 0.0224597

CAGE analysis