Hb_006816_540

Information

Type -
Description -
Location Contig6816: 354266-356737
Sequence    

Annotation

kegg
ID tcc:TCM_026680
description Nodulin MtN3 family protein isoform 1
nr
ID XP_012088980.1
description PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
swissprot
ID Q84WN3
description Bidirectional sugar transporter SWEET17 OS=Arabidopsis thaliana GN=SWEET17 PE=2 SV=2
trembl
ID A0A067JHN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23294 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53864: 354290-356548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_540 0.0 - - PREDICTED: bidirectional sugar transporter SWEET16-like [Jatropha curcas]
2 Hb_007885_120 0.0898295551 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
3 Hb_161954_010 0.1029362313 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
4 Hb_006890_050 0.1064155031 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
5 Hb_004767_010 0.1141216806 - - hypothetical protein CICLE_v10010736mg [Citrus clementina]
6 Hb_002393_060 0.1196632953 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
7 Hb_001227_010 0.1244739051 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
8 Hb_001610_050 0.1247114693 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
9 Hb_002639_120 0.1264707218 - - unnamed protein product [Vitis vinifera]
10 Hb_003031_070 0.137537046 - - PREDICTED: cysteine-rich repeat secretory protein 55-like [Jatropha curcas]
11 Hb_005054_010 0.1419971719 - - amino acid transporter, putative [Ricinus communis]
12 Hb_001481_110 0.1434564675 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
13 Hb_066350_010 0.1549338602 - - somatic embryogenesis receptor-like kinase 4, partial [Rosa hybrid cultivar]
14 Hb_009787_020 0.1556411431 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
15 Hb_009252_110 0.1578836376 - - hypothetical protein JCGZ_11492 [Jatropha curcas]
16 Hb_000987_080 0.1594902188 - - light-inducible protein atls1, putative [Ricinus communis]
17 Hb_021443_020 0.1607203112 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
18 Hb_000702_040 0.1621896558 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
19 Hb_151616_010 0.1624698433 - - -
20 Hb_002267_040 0.1633943189 - - -

Gene co-expression network

sample Hb_006816_540 Hb_006816_540 Hb_007885_120 Hb_007885_120 Hb_006816_540--Hb_007885_120 Hb_161954_010 Hb_161954_010 Hb_006816_540--Hb_161954_010 Hb_006890_050 Hb_006890_050 Hb_006816_540--Hb_006890_050 Hb_004767_010 Hb_004767_010 Hb_006816_540--Hb_004767_010 Hb_002393_060 Hb_002393_060 Hb_006816_540--Hb_002393_060 Hb_001227_010 Hb_001227_010 Hb_006816_540--Hb_001227_010 Hb_007885_120--Hb_006890_050 Hb_005054_010 Hb_005054_010 Hb_007885_120--Hb_005054_010 Hb_003031_070 Hb_003031_070 Hb_007885_120--Hb_003031_070 Hb_009787_020 Hb_009787_020 Hb_007885_120--Hb_009787_020 Hb_002639_120 Hb_002639_120 Hb_007885_120--Hb_002639_120 Hb_161954_010--Hb_004767_010 Hb_161954_010--Hb_002393_060 Hb_000983_180 Hb_000983_180 Hb_161954_010--Hb_000983_180 Hb_091826_010 Hb_091826_010 Hb_161954_010--Hb_091826_010 Hb_004089_010 Hb_004089_010 Hb_161954_010--Hb_004089_010 Hb_006890_050--Hb_002639_120 Hb_000840_220 Hb_000840_220 Hb_006890_050--Hb_000840_220 Hb_000702_040 Hb_000702_040 Hb_006890_050--Hb_000702_040 Hb_006890_050--Hb_001227_010 Hb_004767_010--Hb_002393_060 Hb_004767_010--Hb_091826_010 Hb_004767_010--Hb_004089_010 Hb_004767_010--Hb_000983_180 Hb_002393_060--Hb_004089_010 Hb_002393_060--Hb_091826_010 Hb_162047_010 Hb_162047_010 Hb_002393_060--Hb_162047_010 Hb_001227_010--Hb_002639_120 Hb_021443_020 Hb_021443_020 Hb_001227_010--Hb_021443_020 Hb_151616_010 Hb_151616_010 Hb_001227_010--Hb_151616_010 Hb_132517_010 Hb_132517_010 Hb_001227_010--Hb_132517_010 Hb_001610_050 Hb_001610_050 Hb_001227_010--Hb_001610_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10208 131.1 0.660123 140.925 0.0618474 0.472766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0984107 0.0387007 0.0713435 15.9589 4.12385

CAGE analysis